Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LDLRP01130 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LDLRP01130 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LDLRP01130 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
LDLRP01130 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LDLRP01130 AL035633.1-201ENST00000406139 838 ntBASIC15.93■□□□□ 0.14
LDLRP01130 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.93■□□□□ 0.14
LDLRP01130 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.93■□□□□ 0.14
LDLRP01130 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
LDLRP01130 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.93■□□□□ 0.14
LDLRP01130 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.93■□□□□ 0.14
LDLRP01130 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.93■□□□□ 0.14
LDLRP01130 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.93■□□□□ 0.14
LDLRP01130 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.93■□□□□ 0.14
LDLRP01130 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.93■□□□□ 0.14
LDLRP01130 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.93■□□□□ 0.14
LDLRP01130 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LDLRP01130 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
LDLRP01130 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LDLRP01130 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.93■□□□□ 0.14
LDLRP01130 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LDLRP01130 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
LDLRP01130 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LDLRP01130 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
LDLRP01130 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.93■□□□□ 0.14
LDLRP01130 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LDLRP01130 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LDLRP01130 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.93■□□□□ 0.14
LDLRP01130 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
LDLRP01130 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.92■□□□□ 0.14
LDLRP01130 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.92■□□□□ 0.14
LDLRP01130 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.92■□□□□ 0.14
LDLRP01130 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.92■□□□□ 0.14
LDLRP01130 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC15.92■□□□□ 0.14
LDLRP01130 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 MIR4469-201ENST00000583919 79 ntBASIC15.92■□□□□ 0.14
LDLRP01130 AC239800.4-201ENST00000603712 296 ntBASIC15.92■□□□□ 0.14
LDLRP01130 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
LDLRP01130 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDLRP01130 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.92■□□□□ 0.14
LDLRP01130 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.91■□□□□ 0.14
LDLRP01130 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 AC023824.1-201ENST00000562945 2975 ntBASIC15.91■□□□□ 0.14
LDLRP01130 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.91■□□□□ 0.14
LDLRP01130 AC092850.2-201ENST00000623821 2697 ntBASIC15.91■□□□□ 0.14
LDLRP01130 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDLRP01130 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.91■□□□□ 0.14
LDLRP01130 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.91■□□□□ 0.14
LDLRP01130 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.91■□□□□ 0.14
LDLRP01130 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC15.91■□□□□ 0.14
LDLRP01130 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LDLRP01130 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.91■□□□□ 0.14
LDLRP01130 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms