Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CTDNEP1O95476 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTDNEP1O95476 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTDNEP1O95476 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CTDNEP1O95476 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTDNEP1O95476 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTDNEP1O95476 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTDNEP1O95476 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTDNEP1O95476 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 SPCS2P4-201ENST00000436160 681 ntBASIC18.92■□□□□ 0.62
CTDNEP1O95476 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 AC027307.2-201ENST00000591252 911 ntBASIC18.92■□□□□ 0.62
CTDNEP1O95476 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTDNEP1O95476 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTDNEP1O95476 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTDNEP1O95476 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CTDNEP1O95476 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTDNEP1O95476 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTDNEP1O95476 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTDNEP1O95476 YBX2P1-201ENST00000394192 760 ntBASIC18.91■□□□□ 0.62
CTDNEP1O95476 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTDNEP1O95476 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 C20orf181-201ENST00000623918 480 ntBASIC18.91■□□□□ 0.62
CTDNEP1O95476 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTDNEP1O95476 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTDNEP1O95476 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTDNEP1O95476 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTDNEP1O95476 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTDNEP1O95476 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTDNEP1O95476 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.91■□□□□ 0.62
CTDNEP1O95476 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTDNEP1O95476 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTDNEP1O95476 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.91■□□□□ 0.62
CTDNEP1O95476 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 MIR346-201ENST00000362234 95 ntBASIC18.9■□□□□ 0.62
CTDNEP1O95476 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 AC061975.2-201ENST00000581722 295 ntBASIC18.9■□□□□ 0.62
CTDNEP1O95476 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 AL365330.1-201ENST00000607459 531 ntBASIC18.9■□□□□ 0.62
CTDNEP1O95476 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 AC008267.7-201ENST00000624570 1194 ntBASIC18.9■□□□□ 0.62
CTDNEP1O95476 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.9■□□□□ 0.62
CTDNEP1O95476 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTDNEP1O95476 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CTDNEP1O95476 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.89■□□□□ 0.62
CTDNEP1O95476 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CTDNEP1O95476 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CTDNEP1O95476 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CTDNEP1O95476 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CTDNEP1O95476 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CTDNEP1O95476 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms