Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CDKL5O76039 AKAP8P1-201ENST00000434743 1349 ntBASIC19.06■□□□□ 0.64
CDKL5O76039 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
CDKL5O76039 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.06■□□□□ 0.64
CDKL5O76039 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 MIR648-201ENST00000385046 94 ntBASIC19.06■□□□□ 0.64
CDKL5O76039 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 MCCD1P2-201ENST00000423228 335 ntBASIC19.06■□□□□ 0.64
CDKL5O76039 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.06■□□□□ 0.64
CDKL5O76039 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.06■□□□□ 0.64
CDKL5O76039 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.06■□□□□ 0.64
CDKL5O76039 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CDKL5O76039 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CDKL5O76039 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
CDKL5O76039 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.06■□□□□ 0.64
CDKL5O76039 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.06■□□□□ 0.64
CDKL5O76039 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.06■□□□□ 0.64
CDKL5O76039 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.06■□□□□ 0.64
CDKL5O76039 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC19.06■□□□□ 0.64
CDKL5O76039 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.06■□□□□ 0.64
CDKL5O76039 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.06■□□□□ 0.64
CDKL5O76039 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CDKL5O76039 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.06■□□□□ 0.64
CDKL5O76039 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.05■□□□□ 0.64
CDKL5O76039 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CDKL5O76039 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 PMS2P7-201ENST00000506558 1336 ntBASIC19.05■□□□□ 0.64
CDKL5O76039 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CDKL5O76039 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.05■□□□□ 0.64
CDKL5O76039 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 POLD2P1-201ENST00000511220 997 ntBASIC19.05■□□□□ 0.64
CDKL5O76039 FAM86C2P-203ENST00000528684 1004 ntBASIC19.05■□□□□ 0.64
CDKL5O76039 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.05■□□□□ 0.64
CDKL5O76039 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.05■□□□□ 0.64
CDKL5O76039 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.05■□□□□ 0.64
CDKL5O76039 AL365330.1-201ENST00000607459 531 ntBASIC19.05■□□□□ 0.64
CDKL5O76039 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
CDKL5O76039 PCDHA1-201ENST00000378133 2726 ntBASIC19.05■□□□□ 0.64
CDKL5O76039 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.05■□□□□ 0.64
CDKL5O76039 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CDKL5O76039 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.05■□□□□ 0.64
CDKL5O76039 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CDKL5O76039 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC19.05■□□□□ 0.64
CDKL5O76039 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDKL5O76039 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CDKL5O76039 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDKL5O76039 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.04■□□□□ 0.64
CDKL5O76039 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDKL5O76039 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.04■□□□□ 0.64
CDKL5O76039 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDKL5O76039 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDKL5O76039 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
CDKL5O76039 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDKL5O76039 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDKL5O76039 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CDKL5O76039 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDKL5O76039 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDKL5O76039 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDKL5O76039 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDKL5O76039 AL355306.1-201ENST00000415580 579 ntBASIC19.04■□□□□ 0.64
CDKL5O76039 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CDKL5O76039 AC004832.2-201ENST00000426397 482 ntBASIC19.04■□□□□ 0.64
CDKL5O76039 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.04■□□□□ 0.64
CDKL5O76039 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.04■□□□□ 0.64
CDKL5O76039 FAM58CP-201ENST00000435741 640 ntBASIC19.04■□□□□ 0.64
CDKL5O76039 PGAM5P1-201ENST00000518923 814 ntBASIC19.04■□□□□ 0.64
CDKL5O76039 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC19.04■□□□□ 0.64
CDKL5O76039 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDKL5O76039 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.04■□□□□ 0.64
CDKL5O76039 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CDKL5O76039 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms