Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
HDAC3O15379 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16■□□□□ 0.15
HDAC3O15379 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16■□□□□ 0.15
HDAC3O15379 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16■□□□□ 0.15
HDAC3O15379 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16■□□□□ 0.15
HDAC3O15379 AL049597.2-201ENST00000565575 961 ntBASIC16■□□□□ 0.15
HDAC3O15379 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16■□□□□ 0.15
HDAC3O15379 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16■□□□□ 0.15
HDAC3O15379 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16■□□□□ 0.15
HDAC3O15379 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16■□□□□ 0.15
HDAC3O15379 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
HDAC3O15379 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16■□□□□ 0.15
HDAC3O15379 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16■□□□□ 0.15
HDAC3O15379 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16■□□□□ 0.15
HDAC3O15379 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16■□□□□ 0.15
HDAC3O15379 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16■□□□□ 0.15
HDAC3O15379 DKFZP434H168-201ENST00000567381 1905 ntBASIC16■□□□□ 0.15
HDAC3O15379 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.99■□□□□ 0.15
HDAC3O15379 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.99■□□□□ 0.15
HDAC3O15379 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.99■□□□□ 0.15
HDAC3O15379 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.99■□□□□ 0.15
HDAC3O15379 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.99■□□□□ 0.15
HDAC3O15379 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
HDAC3O15379 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 ARMC10P1-201ENST00000313754 855 ntBASIC15.99■□□□□ 0.15
HDAC3O15379 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.99■□□□□ 0.15
HDAC3O15379 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.99■□□□□ 0.15
HDAC3O15379 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.99■□□□□ 0.15
HDAC3O15379 MTDHP3-201ENST00000594186 672 ntBASIC15.99■□□□□ 0.15
HDAC3O15379 AC069148.1-201ENST00000608741 768 ntBASIC15.99■□□□□ 0.15
HDAC3O15379 AC092119.3-201ENST00000612618 583 ntBASIC15.99■□□□□ 0.15
HDAC3O15379 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.99■□□□□ 0.15
HDAC3O15379 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC15.99■□□□□ 0.15
HDAC3O15379 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
HDAC3O15379 AP000550.4-202ENST00000639755 178 ntBASIC15.99■□□□□ 0.15
HDAC3O15379 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.99■□□□□ 0.15
HDAC3O15379 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 AC023157.3-201ENST00000619086 2088 ntBASIC15.99■□□□□ 0.15
HDAC3O15379 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.99■□□□□ 0.15
HDAC3O15379 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
HDAC3O15379 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
HDAC3O15379 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HDAC3O15379 NORAD-201ENST00000565493 5339 ntBASIC15.98■□□□□ 0.15
HDAC3O15379 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
HDAC3O15379 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.98■□□□□ 0.15
HDAC3O15379 SSR4P1-203ENST00000599569 2260 ntBASIC15.98■□□□□ 0.15
HDAC3O15379 AC129492.6-201ENST00000611383 1305 ntBASIC15.98■□□□□ 0.15
HDAC3O15379 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 AC099063.4-201ENST00000641099 1602 ntBASIC15.98■□□□□ 0.15
HDAC3O15379 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.98■□□□□ 0.15
HDAC3O15379 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
HDAC3O15379 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.98■□□□□ 0.15
HDAC3O15379 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.98■□□□□ 0.15
HDAC3O15379 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
HDAC3O15379 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms