Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
NPHP1O15259 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPHP1O15259 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
NPHP1O15259 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.61■□□□□ 0.89
NPHP1O15259 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
NPHP1O15259 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC20.6■□□□□ 0.89
NPHP1O15259 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC20.6■□□□□ 0.89
NPHP1O15259 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
NPHP1O15259 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC20.6■□□□□ 0.89
NPHP1O15259 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
NPHP1O15259 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.6■□□□□ 0.89
NPHP1O15259 PGF-202ENST00000405431 666 ntTSL 5 BASIC20.6■□□□□ 0.89
NPHP1O15259 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.6■□□□□ 0.89
NPHP1O15259 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC20.6■□□□□ 0.89
NPHP1O15259 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC20.6■□□□□ 0.89
NPHP1O15259 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
NPHP1O15259 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
NPHP1O15259 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
NPHP1O15259 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.6■□□□□ 0.89
NPHP1O15259 IGHV3-72-202ENST00000621503 303 ntBASIC20.6■□□□□ 0.89
NPHP1O15259 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
NPHP1O15259 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NPHP1O15259 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
NPHP1O15259 AC008764.6-201ENST00000595909 2069 ntBASIC20.6■□□□□ 0.89
NPHP1O15259 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.6■□□□□ 0.89
NPHP1O15259 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
NPHP1O15259 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
NPHP1O15259 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC20.59■□□□□ 0.89
NPHP1O15259 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC20.59■□□□□ 0.89
NPHP1O15259 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.59■□□□□ 0.89
NPHP1O15259 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC20.59■□□□□ 0.89
NPHP1O15259 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.59■□□□□ 0.89
NPHP1O15259 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.59■□□□□ 0.89
NPHP1O15259 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC20.59■□□□□ 0.89
NPHP1O15259 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC20.59■□□□□ 0.89
NPHP1O15259 AC044860.1-202ENST00000559481 777 ntBASIC20.59■□□□□ 0.89
NPHP1O15259 AC010336.2-201ENST00000564226 506 ntBASIC20.59■□□□□ 0.89
NPHP1O15259 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.59■□□□□ 0.89
NPHP1O15259 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC20.59■□□□□ 0.89
NPHP1O15259 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.59■□□□□ 0.89
NPHP1O15259 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.59■□□□□ 0.89
NPHP1O15259 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.59■□□□□ 0.89
NPHP1O15259 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.59■□□□□ 0.89
NPHP1O15259 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.59■□□□□ 0.89
NPHP1O15259 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.59■□□□□ 0.89
NPHP1O15259 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPHP1O15259 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.58■□□□□ 0.89
NPHP1O15259 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.58■□□□□ 0.89
NPHP1O15259 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP1O15259 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.58■□□□□ 0.89
NPHP1O15259 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP1O15259 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP1O15259 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
NPHP1O15259 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
NPHP1O15259 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP1O15259 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
NPHP1O15259 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP1O15259 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP1O15259 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC20.58■□□□□ 0.89
NPHP1O15259 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP1O15259 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
NPHP1O15259 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC20.58■□□□□ 0.89
NPHP1O15259 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC20.58■□□□□ 0.89
NPHP1O15259 NAA38-207ENST00000576861 556 ntTSL 3 BASIC20.58■□□□□ 0.89
NPHP1O15259 AC024267.1-201ENST00000582320 895 ntBASIC20.58■□□□□ 0.89
NPHP1O15259 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC20.58■□□□□ 0.89
NPHP1O15259 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.58■□□□□ 0.89
NPHP1O15259 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPHP1O15259 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
NPHP1O15259 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP1O15259 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP1O15259 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP1O15259 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NPHP1O15259 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms