Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.29■□□□□ 0.36
CDH9Q9ULB4 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 AC011467.4-201ENST00000594891 528 ntBASIC17.28■□□□□ 0.36
CDH9Q9ULB4 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 AC026979.3-201ENST00000607315 403 ntBASIC17.28■□□□□ 0.36
CDH9Q9ULB4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 AC073592.8-201ENST00000624126 511 ntBASIC17.28■□□□□ 0.36
CDH9Q9ULB4 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CDH9Q9ULB4 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 BASP1P1-201ENST00000430708 665 ntBASIC17.27■□□□□ 0.36
CDH9Q9ULB4 AC092580.3-201ENST00000430932 139 ntBASIC17.27■□□□□ 0.36
CDH9Q9ULB4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 MTND6P24-201ENST00000440466 518 ntBASIC17.27■□□□□ 0.36
CDH9Q9ULB4 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 HLA-V-204ENST00000476601 1289 ntBASIC17.27■□□□□ 0.36
CDH9Q9ULB4 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 AC093214.1-201ENST00000511688 1107 ntBASIC17.27■□□□□ 0.36
CDH9Q9ULB4 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 IGHV3-42-201ENST00000520410 361 ntBASIC17.27■□□□□ 0.36
CDH9Q9ULB4 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH9Q9ULB4 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
CDH9Q9ULB4 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
CDH9Q9ULB4 AC005052.1-201ENST00000625181 2492 ntBASIC17.27■□□□□ 0.35
CDH9Q9ULB4 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.27■□□□□ 0.35
CDH9Q9ULB4 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
CDH9Q9ULB4 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDH9Q9ULB4 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDH9Q9ULB4 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDH9Q9ULB4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
CDH9Q9ULB4 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 RNA5SP421-201ENST00000516864 134 ntBASIC17.26■□□□□ 0.35
CDH9Q9ULB4 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 AL133215.2-201ENST00000609242 977 ntBASIC17.26■□□□□ 0.35
CDH9Q9ULB4 SPDYE12P-201ENST00000618416 771 ntBASIC17.26■□□□□ 0.35
CDH9Q9ULB4 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms