Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
NDE1Q9NXR1 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.97■□□□□ 0.15
NDE1Q9NXR1 AL512652.2-201ENST00000625156 1716 ntBASIC15.97■□□□□ 0.15
NDE1Q9NXR1 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
NDE1Q9NXR1 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 KRT8P39-201ENST00000396270 1433 ntBASIC15.96■□□□□ 0.15
NDE1Q9NXR1 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 SLC25A3P1-201ENST00000443844 931 ntBASIC15.96■□□□□ 0.15
NDE1Q9NXR1 HOMER2P1-201ENST00000455653 964 ntBASIC15.96■□□□□ 0.15
NDE1Q9NXR1 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 VENTXP5-201ENST00000523979 775 ntBASIC15.96■□□□□ 0.15
NDE1Q9NXR1 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 AC090616.6-201ENST00000582640 721 ntBASIC15.96■□□□□ 0.15
NDE1Q9NXR1 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 AC011467.2-201ENST00000598425 242 ntBASIC15.96■□□□□ 0.15
NDE1Q9NXR1 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 PCGF3-213ENST00000620529 1899 ntBASIC15.96■□□□□ 0.15
NDE1Q9NXR1 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 TOP3BP1-201ENST00000420768 1380 ntBASIC15.96■□□□□ 0.15
NDE1Q9NXR1 AC026748.1-201ENST00000624349 3251 ntBASIC15.96■□□□□ 0.15
NDE1Q9NXR1 AC023908.3-201ENST00000564211 3047 ntBASIC15.96■□□□□ 0.15
NDE1Q9NXR1 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
NDE1Q9NXR1 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
NDE1Q9NXR1 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC15.96■□□□□ 0.14
NDE1Q9NXR1 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
NDE1Q9NXR1 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
NDE1Q9NXR1 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
NDE1Q9NXR1 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
NDE1Q9NXR1 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
NDE1Q9NXR1 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.96■□□□□ 0.14
NDE1Q9NXR1 PCDHA3-202ENST00000532566 4594 ntBASIC15.95■□□□□ 0.14
NDE1Q9NXR1 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 AC006486.2-201ENST00000624246 2199 ntBASIC15.95■□□□□ 0.14
NDE1Q9NXR1 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 AC069224.1-201ENST00000566372 1715 ntBASIC15.95■□□□□ 0.14
NDE1Q9NXR1 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 TERC-201ENST00000602385 541 ntBASIC15.95■□□□□ 0.14
NDE1Q9NXR1 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 REXO1L8P-201ENST00000604378 1897 ntBASIC15.95■□□□□ 0.14
NDE1Q9NXR1 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
NDE1Q9NXR1 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
NDE1Q9NXR1 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
NDE1Q9NXR1 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms