Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 SPDYE11-202ENST00000450699 704 ntBASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 CEND1P1-201ENST00000451006 455 ntBASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 RN7SL589P-201ENST00000481268 310 ntBASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 PUS1-205ENST00000535067 838 ntTSL 3 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 AC092865.5-201ENST00000545435 363 ntBASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 SPDYE9P-201ENST00000570642 692 ntBASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 MIR4469-201ENST00000583919 79 ntBASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 AC026120.1-201ENST00000611536 926 ntBASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 SPDYE10P-202ENST00000612005 668 ntBASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 SPDYE8P-202ENST00000612377 668 ntBASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 SP100-205ENST00000409824 1802 ntTSL 5 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SMC4Q9NTJ3 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 RPSAP43-201ENST00000402237 625 ntBASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 AC112482.1-201ENST00000492080 688 ntBASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 AC079140.1-201ENST00000508039 487 ntBASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 LINC02199-201ENST00000506655 2702 ntBASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC4Q9NTJ3 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 UPF3AP3-201ENST00000420996 769 ntBASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 SPCS2P4-201ENST00000436160 681 ntBASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 YBX1P5-201ENST00000509441 847 ntBASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC21.02■□□□□ 0.96
SMC4Q9NTJ3 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms