Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 MIR663B-201ENST00000408361 115 ntBASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 BAATP1-201ENST00000412284 1225 ntBASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 AC134915.1-201ENST00000426461 574 ntBASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 AC016694.1-201ENST00000434179 700 ntBASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 MIR4321-201ENST00000592276 80 ntBASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 AL049840.4-201ENST00000602422 811 ntBASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 AC106872.11-201ENST00000605838 421 ntBASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 HADH-212ENST00000638621 741 ntTSL 5 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 USE1-206ENST00000595101 1776 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 AC018470.1-201ENST00000624790 3129 ntBASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 CALR4P-201ENST00000431943 946 ntBASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 AC012441.1-201ENST00000446669 685 ntBASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 RHOXF1P1-202ENST00000635473 501 ntBASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 AL645728.1-201ENST00000366221 2101 ntBASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 U82695.1-201ENST00000635752 1889 ntBASIC19.36■□□□□ 0.69
ZNF541Q9H0D2 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 PKIG-203ENST00000372887 769 ntTSL 3 BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 AC079316.1-201ENST00000548397 411 ntBASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 COG4-212ENST00000564653 590 ntTSL 5 BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 AC120045.2-201ENST00000567334 178 ntBASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 GNRHR2-203ENST00000581100 1187 ntBASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 AL365330.1-201ENST00000607459 531 ntBASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF541Q9H0D2 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ZNF541Q9H0D2 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ZNF541Q9H0D2 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZNF541Q9H0D2 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ZNF541Q9H0D2 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZNF541Q9H0D2 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZNF541Q9H0D2 AC134312.5-201ENST00000568031 1313 ntBASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms