Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 AC097493.3-201ENST00000509725 367 ntBASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 RAB34-223ENST00000636154 730 ntTSL 2 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 FO538757.1-201ENST00000623083 1397 ntBASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 SATB1-217ENST00000493952 626 ntTSL 3 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 PRR29-209ENST00000582540 967 ntTSL 2 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 AL096865.1-201ENST00000606796 927 ntBASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CHMP4AQ9BY43 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP4AQ9BY43 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP4AQ9BY43 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP4AQ9BY43 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP4AQ9BY43 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CHMP4AQ9BY43 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP4AQ9BY43 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHMP4AQ9BY43 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 SPDYE17-201ENST00000412399 783 ntBASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 AGGF1P2-201ENST00000426656 2106 ntBASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 AC241585.1-201ENST00000433527 519 ntBASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 AC027369.6-201ENST00000525520 931 ntBASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 AL589739.1-201ENST00000607720 493 ntBASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHMP4AQ9BY43 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms