Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.18■□□□□ 0.66
NUP88Q99567 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NUP88Q99567 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
NUP88Q99567 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
NUP88Q99567 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUP88Q99567 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUP88Q99567 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
NUP88Q99567 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC19.18■□□□□ 0.66
NUP88Q99567 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC19.18■□□□□ 0.66
NUP88Q99567 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC19.18■□□□□ 0.66
NUP88Q99567 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC19.18■□□□□ 0.66
NUP88Q99567 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC19.18■□□□□ 0.66
NUP88Q99567 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NUP88Q99567 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC19.18■□□□□ 0.66
NUP88Q99567 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.18■□□□□ 0.66
NUP88Q99567 AL158211.3-201ENST00000607385 239 ntBASIC19.18■□□□□ 0.66
NUP88Q99567 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NUP88Q99567 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
NUP88Q99567 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NUP88Q99567 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUP88Q99567 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.18■□□□□ 0.66
NUP88Q99567 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.18■□□□□ 0.66
NUP88Q99567 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
NUP88Q99567 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
NUP88Q99567 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NUP88Q99567 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.17■□□□□ 0.66
NUP88Q99567 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.17■□□□□ 0.66
NUP88Q99567 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
NUP88Q99567 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.17■□□□□ 0.66
NUP88Q99567 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC19.17■□□□□ 0.66
NUP88Q99567 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC19.17■□□□□ 0.66
NUP88Q99567 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC19.17■□□□□ 0.66
NUP88Q99567 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC19.17■□□□□ 0.66
NUP88Q99567 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.17■□□□□ 0.66
NUP88Q99567 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC19.17■□□□□ 0.66
NUP88Q99567 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC19.17■□□□□ 0.66
NUP88Q99567 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19.17■□□□□ 0.66
NUP88Q99567 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.17■□□□□ 0.66
NUP88Q99567 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.17■□□□□ 0.66
NUP88Q99567 AC138761.1-201ENST00000584393 385 ntBASIC19.17■□□□□ 0.66
NUP88Q99567 COQ4-205ENST00000609948 956 ntTSL 2 BASIC19.17■□□□□ 0.66
NUP88Q99567 SPTSSB-204ENST00000617024 1292 ntBASIC19.17■□□□□ 0.66
NUP88Q99567 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.17■□□□□ 0.66
NUP88Q99567 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.17■□□□□ 0.66
NUP88Q99567 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 AC105020.1-201ENST00000435356 2205 ntBASIC19.17■□□□□ 0.66
NUP88Q99567 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.17■□□□□ 0.66
NUP88Q99567 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUP88Q99567 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
NUP88Q99567 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.17■□□□□ 0.66
NUP88Q99567 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.17■□□□□ 0.66
NUP88Q99567 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC19.17■□□□□ 0.66
NUP88Q99567 AL031731.1-201ENST00000642131 2094 ntBASIC19.16■□□□□ 0.66
NUP88Q99567 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUP88Q99567 AGGF1P2-201ENST00000426656 2106 ntBASIC19.16■□□□□ 0.66
NUP88Q99567 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
NUP88Q99567 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
NUP88Q99567 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.16■□□□□ 0.66
NUP88Q99567 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
NUP88Q99567 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUP88Q99567 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
NUP88Q99567 FER1L4-210ENST00000615531 5998 ntBASIC19.16■□□□□ 0.66
NUP88Q99567 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUP88Q99567 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.16■□□□□ 0.66
NUP88Q99567 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NUP88Q99567 AC236430.1-201ENST00000402231 743 ntBASIC19.16■□□□□ 0.66
NUP88Q99567 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NUP88Q99567 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.16■□□□□ 0.66
NUP88Q99567 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
NUP88Q99567 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC19.16■□□□□ 0.66
NUP88Q99567 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NUP88Q99567 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC19.16■□□□□ 0.66
NUP88Q99567 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.16■□□□□ 0.66
NUP88Q99567 SPDYE12P-201ENST00000618416 771 ntBASIC19.16■□□□□ 0.66
NUP88Q99567 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
NUP88Q99567 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NUP88Q99567 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUP88Q99567 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUP88Q99567 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms