Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.31■□□□□ 0.68
BRF1Q92994 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
BRF1Q92994 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
BRF1Q92994 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
BRF1Q92994 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.31■□□□□ 0.68
BRF1Q92994 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.31■□□□□ 0.68
BRF1Q92994 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
BRF1Q92994 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.31■□□□□ 0.68
BRF1Q92994 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC19.31■□□□□ 0.68
BRF1Q92994 AC040169.1-201ENST00000565382 521 ntBASIC19.31■□□□□ 0.68
BRF1Q92994 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.31■□□□□ 0.68
BRF1Q92994 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
BRF1Q92994 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC19.31■□□□□ 0.68
BRF1Q92994 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC19.3■□□□□ 0.68
BRF1Q92994 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC19.3■□□□□ 0.68
BRF1Q92994 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
BRF1Q92994 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
BRF1Q92994 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
BRF1Q92994 AC010491.1-201ENST00000563101 2797 ntBASIC19.3■□□□□ 0.68
BRF1Q92994 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
BRF1Q92994 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC19.3■□□□□ 0.68
BRF1Q92994 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.3■□□□□ 0.68
BRF1Q92994 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.3■□□□□ 0.68
BRF1Q92994 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.3■□□□□ 0.68
BRF1Q92994 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
BRF1Q92994 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
BRF1Q92994 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.3■□□□□ 0.68
BRF1Q92994 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 U82695.1-201ENST00000635752 1889 ntBASIC19.3■□□□□ 0.68
BRF1Q92994 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
BRF1Q92994 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 AC022188.1-201ENST00000620960 1664 ntBASIC19.3■□□□□ 0.68
BRF1Q92994 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 AL603832.2-201ENST00000566195 2125 ntBASIC19.3■□□□□ 0.68
BRF1Q92994 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF1Q92994 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.29■□□□□ 0.68
BRF1Q92994 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
BRF1Q92994 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.29■□□□□ 0.68
BRF1Q92994 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
BRF1Q92994 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC19.29■□□□□ 0.68
BRF1Q92994 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
BRF1Q92994 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
BRF1Q92994 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.29■□□□□ 0.68
BRF1Q92994 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.29■□□□□ 0.68
BRF1Q92994 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 FAM58CP-201ENST00000435741 640 ntBASIC19.29■□□□□ 0.68
BRF1Q92994 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
BRF1Q92994 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.29■□□□□ 0.68
BRF1Q92994 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF1Q92994 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
BRF1Q92994 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms