Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 TSSK5P-201ENST00000423978 907 ntBASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 AC012313.1-201ENST00000593393 3059 ntBASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 AL589702.1-201ENST00000641229 1509 ntBASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 AC024267.1-201ENST00000582320 895 ntBASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
HDDC3Q8N4P3 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 ARSEP1-201ENST00000420443 635 ntBASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 IGHV3-71-201ENST00000523324 359 ntBASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 BANF1P1-201ENST00000553684 263 ntBASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.41■□□□□ 0.22
HDDC3Q8N4P3 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms