Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.41■□□□□ 0.22
LDB1Q86U70 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB1Q86U70 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB1Q86U70 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
LDB1Q86U70 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.41■□□□□ 0.22
LDB1Q86U70 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.41■□□□□ 0.22
LDB1Q86U70 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB1Q86U70 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB1Q86U70 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LDB1Q86U70 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.41■□□□□ 0.22
LDB1Q86U70 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LDB1Q86U70 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LDB1Q86U70 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LDB1Q86U70 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
LDB1Q86U70 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.41■□□□□ 0.22
LDB1Q86U70 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LDB1Q86U70 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LDB1Q86U70 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LDB1Q86U70 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LDB1Q86U70 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.4■□□□□ 0.22
LDB1Q86U70 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LDB1Q86U70 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
LDB1Q86U70 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
LDB1Q86U70 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 POLD2P1-201ENST00000511220 997 ntBASIC16.4■□□□□ 0.22
LDB1Q86U70 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.4■□□□□ 0.22
LDB1Q86U70 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.4■□□□□ 0.22
LDB1Q86U70 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.4■□□□□ 0.22
LDB1Q86U70 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.4■□□□□ 0.22
LDB1Q86U70 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
LDB1Q86U70 AC024909.3-201ENST00000611513 2257 ntBASIC16.4■□□□□ 0.22
LDB1Q86U70 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.4■□□□□ 0.22
LDB1Q86U70 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.4■□□□□ 0.22
LDB1Q86U70 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.4■□□□□ 0.22
LDB1Q86U70 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB1Q86U70 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.39■□□□□ 0.22
LDB1Q86U70 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.39■□□□□ 0.21
LDB1Q86U70 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.39■□□□□ 0.21
LDB1Q86U70 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.39■□□□□ 0.21
LDB1Q86U70 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LDB1Q86U70 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.39■□□□□ 0.21
LDB1Q86U70 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 AL022342.1-201ENST00000400363 863 ntBASIC16.39■□□□□ 0.21
LDB1Q86U70 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 AL591424.1-201ENST00000442569 1213 ntBASIC16.39■□□□□ 0.21
LDB1Q86U70 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.39■□□□□ 0.21
LDB1Q86U70 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 AC109635.5-201ENST00000533593 962 ntBASIC16.39■□□□□ 0.21
LDB1Q86U70 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.39■□□□□ 0.21
LDB1Q86U70 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
LDB1Q86U70 AP002472.1-201ENST00000577490 586 ntBASIC16.39■□□□□ 0.21
LDB1Q86U70 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.39■□□□□ 0.21
LDB1Q86U70 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.39■□□□□ 0.21
LDB1Q86U70 AC068137.2-201ENST00000605408 478 ntBASIC16.39■□□□□ 0.21
LDB1Q86U70 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.39■□□□□ 0.21
LDB1Q86U70 FAM197Y3-203ENST00000618346 717 ntBASIC16.39■□□□□ 0.21
LDB1Q86U70 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.39■□□□□ 0.21
LDB1Q86U70 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.39■□□□□ 0.21
LDB1Q86U70 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
LDB1Q86U70 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.39■□□□□ 0.21
LDB1Q86U70 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LDB1Q86U70 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.39■□□□□ 0.21
LDB1Q86U70 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB1Q86U70 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms