Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CU639417.3-201ENST00000624240 1404 ntBASIC16.67■□□□□ 0.26
USP39Q53GS9 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.67■□□□□ 0.26
USP39Q53GS9 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
USP39Q53GS9 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP39Q53GS9 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.67■□□□□ 0.26
USP39Q53GS9 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP39Q53GS9 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USP39Q53GS9 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
USP39Q53GS9 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP39Q53GS9 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
USP39Q53GS9 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
USP39Q53GS9 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 AC092053.1-201ENST00000605787 1936 ntBASIC16.66■□□□□ 0.26
USP39Q53GS9 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.66■□□□□ 0.26
USP39Q53GS9 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
USP39Q53GS9 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
USP39Q53GS9 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.66■□□□□ 0.26
USP39Q53GS9 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
USP39Q53GS9 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 HLA-H-201ENST00000383620 1096 ntBASIC16.66■□□□□ 0.26
USP39Q53GS9 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
USP39Q53GS9 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.66■□□□□ 0.26
USP39Q53GS9 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.66■□□□□ 0.26
USP39Q53GS9 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.66■□□□□ 0.26
USP39Q53GS9 AL353705.2-201ENST00000428243 662 ntBASIC16.66■□□□□ 0.26
USP39Q53GS9 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.66■□□□□ 0.26
USP39Q53GS9 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.66■□□□□ 0.26
USP39Q53GS9 SPTLC1P1-201ENST00000447199 261 ntBASIC16.66■□□□□ 0.26
USP39Q53GS9 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.66■□□□□ 0.26
USP39Q53GS9 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.66■□□□□ 0.26
USP39Q53GS9 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.66■□□□□ 0.26
USP39Q53GS9 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.66■□□□□ 0.26
USP39Q53GS9 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.66■□□□□ 0.26
USP39Q53GS9 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.66■□□□□ 0.26
USP39Q53GS9 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.66■□□□□ 0.26
USP39Q53GS9 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.66■□□□□ 0.26
USP39Q53GS9 KRT8P49-201ENST00000604166 1432 ntBASIC16.66■□□□□ 0.26
USP39Q53GS9 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
USP39Q53GS9 MIR6752-201ENST00000618442 71 ntBASIC16.66■□□□□ 0.26
USP39Q53GS9 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.66■□□□□ 0.26
USP39Q53GS9 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.66■□□□□ 0.26
USP39Q53GS9 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.66■□□□□ 0.26
USP39Q53GS9 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
USP39Q53GS9 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP39Q53GS9 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
USP39Q53GS9 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
USP39Q53GS9 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 AC105020.1-201ENST00000435356 2205 ntBASIC16.65■□□□□ 0.26
USP39Q53GS9 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.65■□□□□ 0.26
USP39Q53GS9 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.65■□□□□ 0.26
USP39Q53GS9 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
USP39Q53GS9 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.65■□□□□ 0.26
USP39Q53GS9 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
USP39Q53GS9 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.65■□□□□ 0.26
USP39Q53GS9 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 AC007274.1-201ENST00000439805 662 ntBASIC16.65■□□□□ 0.26
USP39Q53GS9 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 MEIS3P1-201ENST00000495167 958 ntBASIC16.65■□□□□ 0.26
USP39Q53GS9 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.65■□□□□ 0.26
USP39Q53GS9 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.65■□□□□ 0.26
USP39Q53GS9 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.65■□□□□ 0.26
USP39Q53GS9 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.65■□□□□ 0.26
USP39Q53GS9 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 AC005915.1-201ENST00000624912 2018 ntBASIC16.65■□□□□ 0.26
USP39Q53GS9 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.65■□□□□ 0.26
USP39Q53GS9 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP39Q53GS9 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms