Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 AC092902.6-201ENST00000641783 218 ntBASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 KRT18P28-201ENST00000453838 1332 ntBASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 METTL21AP1-201ENST00000438852 635 ntBASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 AP002472.1-201ENST00000577490 586 ntBASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.07■□□□□ 0.16
PTCHD3Q3KNS1 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 MTHFR-217ENST00000641820 1569 ntBASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 POU5F1P6-201ENST00000466990 990 ntBASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.06■□□□□ 0.16
PTCHD3Q3KNS1 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms