Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 KRT8P44-201ENST00000441609 1350 ntBASIC15.8■□□□□ 0.12
COL28A1Q2UY09 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 AP000842.3-202ENST00000569238 1080 ntBASIC15.8■□□□□ 0.12
COL28A1Q2UY09 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 AC022211.2-201ENST00000585075 2527 ntBASIC15.8■□□□□ 0.12
COL28A1Q2UY09 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.79■□□□□ 0.12
COL28A1Q2UY09 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 MIR4515-201ENST00000584082 81 ntBASIC15.79■□□□□ 0.12
COL28A1Q2UY09 AC008738.7-201ENST00000609744 511 ntBASIC15.79■□□□□ 0.12
COL28A1Q2UY09 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 AC116353.5-201ENST00000638148 1699 ntBASIC15.79■□□□□ 0.12
COL28A1Q2UY09 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL28A1Q2UY09 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 AC093525.9-201ENST00000624961 1746 ntBASIC15.78■□□□□ 0.12
COL28A1Q2UY09 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 APOC4-201ENST00000591600 348 ntTSL 3 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 AL512343.1-201ENST00000605837 169 ntBASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 126.9 ms