Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
LIM2P55344 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIM2P55344 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.59■□□□□ 0.09
LIM2P55344 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIM2P55344 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIM2P55344 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
LIM2P55344 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.58■□□□□ 0.09
LIM2P55344 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
LIM2P55344 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.58■□□□□ 0.09
LIM2P55344 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.58■□□□□ 0.09
LIM2P55344 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.58■□□□□ 0.09
LIM2P55344 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.09
LIM2P55344 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LIM2P55344 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
LIM2P55344 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LIM2P55344 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.58■□□□□ 0.08
LIM2P55344 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.58■□□□□ 0.08
LIM2P55344 AC022188.1-201ENST00000620960 1664 ntBASIC15.58■□□□□ 0.08
LIM2P55344 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIM2P55344 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.58■□□□□ 0.08
LIM2P55344 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIM2P55344 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIM2P55344 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIM2P55344 KRT18P13-201ENST00000400056 1290 ntBASIC15.58■□□□□ 0.08
LIM2P55344 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.58■□□□□ 0.08
LIM2P55344 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.58■□□□□ 0.08
LIM2P55344 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.58■□□□□ 0.08
LIM2P55344 POU5F1P6-201ENST00000466990 990 ntBASIC15.58■□□□□ 0.08
LIM2P55344 RN7SL589P-201ENST00000481268 310 ntBASIC15.58■□□□□ 0.08
LIM2P55344 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.58■□□□□ 0.08
LIM2P55344 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.58■□□□□ 0.08
LIM2P55344 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.58■□□□□ 0.08
LIM2P55344 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.58■□□□□ 0.08
LIM2P55344 AC026120.1-201ENST00000611536 926 ntBASIC15.58■□□□□ 0.08
LIM2P55344 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.58■□□□□ 0.08
LIM2P55344 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.58■□□□□ 0.08
LIM2P55344 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIM2P55344 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
LIM2P55344 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIM2P55344 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
LIM2P55344 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.58■□□□□ 0.08
LIM2P55344 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIM2P55344 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIM2P55344 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIM2P55344 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIM2P55344 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.58■□□□□ 0.08
LIM2P55344 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
LIM2P55344 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
LIM2P55344 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 AC073439.1-201ENST00000624121 1774 ntBASIC15.57■□□□□ 0.08
LIM2P55344 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
LIM2P55344 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.57■□□□□ 0.08
LIM2P55344 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.57■□□□□ 0.08
LIM2P55344 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
LIM2P55344 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.57■□□□□ 0.08
LIM2P55344 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.57■□□□□ 0.08
LIM2P55344 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.57■□□□□ 0.08
LIM2P55344 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.57■□□□□ 0.08
LIM2P55344 SPDYE11-202ENST00000450699 704 ntBASIC15.57■□□□□ 0.08
LIM2P55344 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
LIM2P55344 KRT8P48-201ENST00000515599 1220 ntBASIC15.57■□□□□ 0.08
LIM2P55344 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.57■□□□□ 0.08
LIM2P55344 AC243562.1-201ENST00000560672 389 ntBASIC15.57■□□□□ 0.08
LIM2P55344 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.57■□□□□ 0.08
LIM2P55344 SPDYE9P-201ENST00000570642 692 ntBASIC15.57■□□□□ 0.08
LIM2P55344 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.57■□□□□ 0.08
LIM2P55344 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.57■□□□□ 0.08
LIM2P55344 SPDYE10P-202ENST00000612005 668 ntBASIC15.57■□□□□ 0.08
LIM2P55344 SPDYE8P-202ENST00000612377 668 ntBASIC15.57■□□□□ 0.08
LIM2P55344 AC023511.2-201ENST00000618803 211 ntBASIC15.57■□□□□ 0.08
LIM2P55344 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.57■□□□□ 0.08
LIM2P55344 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
LIM2P55344 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.57■□□□□ 0.08
LIM2P55344 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
LIM2P55344 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.57■□□□□ 0.08
LIM2P55344 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIM2P55344 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.57■□□□□ 0.08
LIM2P55344 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.57■□□□□ 0.08
LIM2P55344 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.57■□□□□ 0.08
LIM2P55344 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.56■□□□□ 0.08
LIM2P55344 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms