Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.12■□□□□ 0.01
CDH11P55287 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.12■□□□□ 0.01
CDH11P55287 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.12■□□□□ 0.01
CDH11P55287 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH11P55287 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.12■□□□□ 0.01
CDH11P55287 MED15P5-201ENST00000423150 992 ntBASIC15.12■□□□□ 0.01
CDH11P55287 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH11P55287 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.12■□□□□ 0.01
CDH11P55287 IGHV3-22-201ENST00000520721 359 ntBASIC15.12■□□□□ 0.01
CDH11P55287 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.12■□□□□ 0.01
CDH11P55287 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.12■□□□□ 0.01
CDH11P55287 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.12■□□□□ 0.01
CDH11P55287 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH11P55287 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CDH11P55287 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CDH11P55287 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.12■□□□□ 0.01
CDH11P55287 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 AP002414.3-201ENST00000589352 1468 ntBASIC15.12■□□□□ 0.01
CDH11P55287 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH11P55287 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.12■□□□□ 0.01
CDH11P55287 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH11P55287 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH11P55287 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH11P55287 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
CDH11P55287 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH11P55287 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CDH11P55287 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 AC004817.3-201ENST00000602957 2129 ntBASIC15.11■□□□□ 0.01
CDH11P55287 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH11P55287 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CDH11P55287 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CDH11P55287 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH11P55287 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH11P55287 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 KRT18P13-201ENST00000400056 1290 ntBASIC15.11■□□□□ 0.01
CDH11P55287 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH11P55287 LINC00982-205ENST00000420957 435 ntBASIC15.11■□□□□ 0.01
CDH11P55287 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CDH11P55287 S100A2-206ENST00000497140 697 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH11P55287 RNA5SP415-201ENST00000517246 115 ntBASIC15.11■□□□□ 0.01
CDH11P55287 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.11■□□□□ 0.01
CDH11P55287 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH11P55287 AC145285.3-201ENST00000564603 959 ntBASIC15.11■□□□□ 0.01
CDH11P55287 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CDH11P55287 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH11P55287 Z83851.2-201ENST00000609564 659 ntBASIC15.11■□□□□ 0.01
CDH11P55287 AC027601.4-201ENST00000611259 610 ntBASIC15.11■□□□□ 0.01
CDH11P55287 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CDH11P55287 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH11P55287 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CDH11P55287 PMS2P7-201ENST00000506558 1336 ntBASIC15.11■□□□□ 0.01
CDH11P55287 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CDH11P55287 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
CDH11P55287 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH11P55287 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
CDH11P55287 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH11P55287 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CDH11P55287 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.1■□□□□ 0.01
CDH11P55287 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.1■□□□□ 0.01
CDH11P55287 AC007326.2-201ENST00000624224 7579 ntBASIC15.1■□□□□ 0.01
CDH11P55287 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH11P55287 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.1■□□□□ 0.01
CDH11P55287 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH11P55287 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms