Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
EPHB3P54753 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
EPHB3P54753 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.06■□□□□ 0.32
EPHB3P54753 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
EPHB3P54753 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.06■□□□□ 0.32
EPHB3P54753 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
EPHB3P54753 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
EPHB3P54753 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
EPHB3P54753 SPDYE17-201ENST00000412399 783 ntBASIC17.06■□□□□ 0.32
EPHB3P54753 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.06■□□□□ 0.32
EPHB3P54753 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.06■□□□□ 0.32
EPHB3P54753 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.06■□□□□ 0.32
EPHB3P54753 GAPDHP21-201ENST00000450301 1010 ntBASIC17.06■□□□□ 0.32
EPHB3P54753 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.06■□□□□ 0.32
EPHB3P54753 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.06■□□□□ 0.32
EPHB3P54753 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.06■□□□□ 0.32
EPHB3P54753 AC004840.1-201ENST00000636359 365 ntBASIC17.06■□□□□ 0.32
EPHB3P54753 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
EPHB3P54753 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
EPHB3P54753 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
EPHB3P54753 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
EPHB3P54753 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
EPHB3P54753 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
EPHB3P54753 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
EPHB3P54753 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.06■□□□□ 0.32
EPHB3P54753 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.06■□□□□ 0.32
EPHB3P54753 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
EPHB3P54753 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
EPHB3P54753 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.05■□□□□ 0.32
EPHB3P54753 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
EPHB3P54753 AC007541.1-201ENST00000570282 1469 ntBASIC17.05■□□□□ 0.32
EPHB3P54753 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.05■□□□□ 0.32
EPHB3P54753 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
EPHB3P54753 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.05■□□□□ 0.32
EPHB3P54753 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.05■□□□□ 0.32
EPHB3P54753 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
EPHB3P54753 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.05■□□□□ 0.32
EPHB3P54753 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.05■□□□□ 0.32
EPHB3P54753 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
EPHB3P54753 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
EPHB3P54753 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.05■□□□□ 0.32
EPHB3P54753 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.05■□□□□ 0.32
EPHB3P54753 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.05■□□□□ 0.32
EPHB3P54753 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.05■□□□□ 0.32
EPHB3P54753 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.05■□□□□ 0.32
EPHB3P54753 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.05■□□□□ 0.32
EPHB3P54753 AL512361.1-201ENST00000554200 418 ntBASIC17.05■□□□□ 0.32
EPHB3P54753 AC010336.2-201ENST00000564226 506 ntBASIC17.05■□□□□ 0.32
EPHB3P54753 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.05■□□□□ 0.32
EPHB3P54753 AL033527.5-202ENST00000641632 1098 ntBASIC17.05■□□□□ 0.32
EPHB3P54753 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
EPHB3P54753 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
EPHB3P54753 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.05■□□□□ 0.32
EPHB3P54753 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
EPHB3P54753 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.04■□□□□ 0.32
EPHB3P54753 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
EPHB3P54753 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.04■□□□□ 0.32
EPHB3P54753 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.04■□□□□ 0.32
EPHB3P54753 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
EPHB3P54753 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
EPHB3P54753 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
EPHB3P54753 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.04■□□□□ 0.32
EPHB3P54753 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
EPHB3P54753 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.04■□□□□ 0.32
EPHB3P54753 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
EPHB3P54753 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.04■□□□□ 0.32
EPHB3P54753 AL353779.1-201ENST00000434793 351 ntBASIC17.04■□□□□ 0.32
EPHB3P54753 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
EPHB3P54753 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.04■□□□□ 0.32
EPHB3P54753 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.04■□□□□ 0.32
EPHB3P54753 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.04■□□□□ 0.32
EPHB3P54753 AL132655.2-201ENST00000596276 594 ntBASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms