Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLK1P49759 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.52■□□□□ 0.08
CLK1P49759 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLK1P49759 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
CLK1P49759 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.52■□□□□ 0.08
CLK1P49759 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CLK1P49759 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.52■□□□□ 0.08
CLK1P49759 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.52■□□□□ 0.08
CLK1P49759 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.52■□□□□ 0.08
CLK1P49759 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.52■□□□□ 0.08
CLK1P49759 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.52■□□□□ 0.08
CLK1P49759 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CLK1P49759 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.52■□□□□ 0.08
CLK1P49759 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.52■□□□□ 0.08
CLK1P49759 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CLK1P49759 AC006557.2-201ENST00000592985 1240 ntBASIC15.52■□□□□ 0.08
CLK1P49759 AL139424.1-201ENST00000607572 797 ntBASIC15.52■□□□□ 0.08
CLK1P49759 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.52■□□□□ 0.08
CLK1P49759 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CLK1P49759 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.52■□□□□ 0.07
CLK1P49759 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLK1P49759 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLK1P49759 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.52■□□□□ 0.07
CLK1P49759 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CLK1P49759 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
CLK1P49759 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLK1P49759 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLK1P49759 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.52■□□□□ 0.07
CLK1P49759 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLK1P49759 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CLK1P49759 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.51■□□□□ 0.07
CLK1P49759 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CLK1P49759 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.51■□□□□ 0.07
CLK1P49759 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.51■□□□□ 0.07
CLK1P49759 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15.51■□□□□ 0.07
CLK1P49759 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.51■□□□□ 0.07
CLK1P49759 FAM197Y8-203ENST00000450145 560 ntBASIC15.51■□□□□ 0.07
CLK1P49759 AF186996.4-201ENST00000467186 377 ntBASIC15.51■□□□□ 0.07
CLK1P49759 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.51■□□□□ 0.07
CLK1P49759 RNPS1P1-201ENST00000507437 918 ntBASIC15.51■□□□□ 0.07
CLK1P49759 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CLK1P49759 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.51■□□□□ 0.07
CLK1P49759 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.51■□□□□ 0.07
CLK1P49759 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.51■□□□□ 0.07
CLK1P49759 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 AC025062.2-201ENST00000605477 670 ntBASIC15.51■□□□□ 0.07
CLK1P49759 AC107918.4-202ENST00000641623 219 ntBASIC15.51■□□□□ 0.07
CLK1P49759 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
CLK1P49759 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 AC097376.2-205ENST00000610159 5334 ntBASIC15.51■□□□□ 0.07
CLK1P49759 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.51■□□□□ 0.07
CLK1P49759 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CLK1P49759 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLK1P49759 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.51■□□□□ 0.07
CLK1P49759 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.51■□□□□ 0.07
CLK1P49759 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.5■□□□□ 0.07
CLK1P49759 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLK1P49759 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLK1P49759 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLK1P49759 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.5■□□□□ 0.07
CLK1P49759 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLK1P49759 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLK1P49759 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLK1P49759 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.5■□□□□ 0.07
CLK1P49759 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLK1P49759 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLK1P49759 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLK1P49759 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.5■□□□□ 0.07
CLK1P49759 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLK1P49759 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLK1P49759 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CLK1P49759 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.5■□□□□ 0.07
CLK1P49759 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.5■□□□□ 0.07
CLK1P49759 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CLK1P49759 KRT18P67-201ENST00000432816 1264 ntBASIC15.5■□□□□ 0.07
CLK1P49759 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.5■□□□□ 0.07
CLK1P49759 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms