Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC138894.3-201ENST00000603787 634 ntBASIC14.53□□□□□ -0.08
SOX2P48431 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.53□□□□□ -0.08
SOX2P48431 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
SOX2P48431 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.53□□□□□ -0.08
SOX2P48431 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
SOX2P48431 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.53□□□□□ -0.08
SOX2P48431 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.53□□□□□ -0.08
SOX2P48431 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SOX2P48431 AC104640.1-201ENST00000562617 2109 ntBASIC14.53□□□□□ -0.08
SOX2P48431 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SOX2P48431 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX2P48431 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX2P48431 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.52□□□□□ -0.08
SOX2P48431 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC14.52□□□□□ -0.08
SOX2P48431 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.08
SOX2P48431 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SOX2P48431 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
SOX2P48431 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX2P48431 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SOX2P48431 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.52□□□□□ -0.08
SOX2P48431 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SOX2P48431 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.52□□□□□ -0.08
SOX2P48431 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX2P48431 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SOX2P48431 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC14.52□□□□□ -0.09
SOX2P48431 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.52□□□□□ -0.09
SOX2P48431 PRYP5-201ENST00000451909 266 ntBASIC14.52□□□□□ -0.09
SOX2P48431 AC132008.2-207ENST00000454517 770 ntBASIC14.52□□□□□ -0.09
SOX2P48431 KRT18P21-201ENST00000515767 1272 ntBASIC14.52□□□□□ -0.09
SOX2P48431 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC14.52□□□□□ -0.09
SOX2P48431 MIR4492-201ENST00000581627 80 ntBASIC14.52□□□□□ -0.09
SOX2P48431 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SOX2P48431 AL022326.1-202ENST00000641533 845 ntBASIC14.52□□□□□ -0.09
SOX2P48431 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.52□□□□□ -0.09
SOX2P48431 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.52□□□□□ -0.09
SOX2P48431 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SOX2P48431 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.52□□□□□ -0.09
SOX2P48431 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SOX2P48431 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SOX2P48431 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
SOX2P48431 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SOX2P48431 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
SOX2P48431 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
SOX2P48431 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC14.51□□□□□ -0.09
SOX2P48431 AC087388.1-201ENST00000571370 1112 ntBASIC14.51□□□□□ -0.09
SOX2P48431 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC14.51□□□□□ -0.09
SOX2P48431 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
SOX2P48431 AL139424.1-201ENST00000607572 797 ntBASIC14.51□□□□□ -0.09
SOX2P48431 BCL10-202ENST00000620248 774 ntTSL 5 BASIC14.51□□□□□ -0.09
SOX2P48431 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC14.51□□□□□ -0.09
SOX2P48431 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SOX2P48431 GPAA1P2-202ENST00000606848 1787 ntBASIC14.51□□□□□ -0.09
SOX2P48431 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SOX2P48431 AC131009.4-201ENST00000624048 1740 ntBASIC14.51□□□□□ -0.09
SOX2P48431 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SOX2P48431 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
SOX2P48431 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SOX2P48431 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.51□□□□□ -0.09
SOX2P48431 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.51□□□□□ -0.09
SOX2P48431 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
SOX2P48431 AP005117.1-202ENST00000581724 1908 ntBASIC14.51□□□□□ -0.09
SOX2P48431 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
SOX2P48431 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX2P48431 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SOX2P48431 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.5□□□□□ -0.09
SOX2P48431 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms