Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC068880.1-201ENST00000507289 2297 ntBASIC19.32■□□□□ 0.68
COL4A5P29400 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.32■□□□□ 0.68
COL4A5P29400 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.32■□□□□ 0.68
COL4A5P29400 NOC2LP2-201ENST00000407594 1944 ntBASIC19.32■□□□□ 0.68
COL4A5P29400 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL4A5P29400 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A5P29400 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
COL4A5P29400 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A5P29400 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL4A5P29400 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A5P29400 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A5P29400 AC093433.1-201ENST00000458048 571 ntBASIC19.32■□□□□ 0.68
COL4A5P29400 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
COL4A5P29400 ENPP7P5-201ENST00000541031 1031 ntBASIC19.32■□□□□ 0.68
COL4A5P29400 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A5P29400 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC19.32■□□□□ 0.68
COL4A5P29400 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC19.32■□□□□ 0.68
COL4A5P29400 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC19.32■□□□□ 0.68
COL4A5P29400 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A5P29400 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL4A5P29400 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL4A5P29400 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
COL4A5P29400 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A5P29400 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.32■□□□□ 0.68
COL4A5P29400 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A5P29400 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A5P29400 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A5P29400 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 AC004987.2-201ENST00000395959 1148 ntBASIC19.31■□□□□ 0.68
COL4A5P29400 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A5P29400 AC016694.1-201ENST00000434179 700 ntBASIC19.31■□□□□ 0.68
COL4A5P29400 ELP6-209ENST00000446787 894 ntTSL 3 BASIC19.31■□□□□ 0.68
COL4A5P29400 HADH-212ENST00000638621 741 ntTSL 5 BASIC19.31■□□□□ 0.68
COL4A5P29400 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
COL4A5P29400 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL4A5P29400 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
COL4A5P29400 AC134312.5-201ENST00000568031 1313 ntBASIC19.31■□□□□ 0.68
COL4A5P29400 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A5P29400 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A5P29400 BNIP3P1-202ENST00000550043 1585 ntBASIC19.31■□□□□ 0.68
COL4A5P29400 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL4A5P29400 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A5P29400 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
COL4A5P29400 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A5P29400 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 AC007969.1-201ENST00000433675 447 ntBASIC19.3■□□□□ 0.68
COL4A5P29400 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A5P29400 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC19.3■□□□□ 0.68
COL4A5P29400 PRKN-211ENST00000615065 261 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A5P29400 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A5P29400 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A5P29400 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A5P29400 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC19.3■□□□□ 0.68
COL4A5P29400 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A5P29400 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A5P29400 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A5P29400 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A5P29400 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 ZBTB12BP-201ENST00000314232 1122 ntBASIC19.3■□□□□ 0.68
COL4A5P29400 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A5P29400 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.3■□□□□ 0.68
COL4A5P29400 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A5P29400 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A5P29400 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A5P29400 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A5P29400 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A5P29400 AC005695.3-201ENST00000614522 232 ntBASIC19.3■□□□□ 0.68
COL4A5P29400 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A5P29400 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC19.3■□□□□ 0.68
COL4A5P29400 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
COL4A5P29400 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms