Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
HLA-DMBP28068 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
HLA-DMBP28068 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.39
HLA-DMBP28068 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 NID2-208ENST00000617139 3827 ntTSL 5 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 AC006449.6-201ENST00000612330 2296 ntBASIC12.58□□□□□ -0.4
HLA-DMBP28068 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 AC063926.3-201ENST00000624734 5658 ntBASIC12.58□□□□□ -0.4
HLA-DMBP28068 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 RPS2P28-201ENST00000314255 741 ntBASIC12.58□□□□□ -0.4
HLA-DMBP28068 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 AP000347.1-202ENST00000435868 847 ntBASIC12.58□□□□□ -0.4
HLA-DMBP28068 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 AC107918.2-201ENST00000530817 355 ntBASIC12.58□□□□□ -0.4
HLA-DMBP28068 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 AL805961.1-202ENST00000641562 540 ntBASIC12.58□□□□□ -0.4
HLA-DMBP28068 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
HLA-DMBP28068 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DMBP28068 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 PCGF3-213ENST00000620529 1899 ntBASIC12.57□□□□□ -0.4
HLA-DMBP28068 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 RPS15P9-201ENST00000494093 319 ntBASIC12.57□□□□□ -0.4
HLA-DMBP28068 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HLA-DMBP28068 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 CYB561-216ENST00000582297 897 ntTSL 3 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 SIGLEC29P-201ENST00000599873 1114 ntBASIC12.57□□□□□ -0.4
HLA-DMBP28068 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC12.57□□□□□ -0.4
HLA-DMBP28068 BX640515.1-201ENST00000617215 977 ntBASIC12.57□□□□□ -0.4
HLA-DMBP28068 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms