Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL133338.1-201ENST00000565695 1517 ntBASIC15.5■□□□□ 0.07
COL5A1P20908 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 KRT8P22-201ENST00000562317 1415 ntBASIC15.5■□□□□ 0.07
COL5A1P20908 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC15.5■□□□□ 0.07
COL5A1P20908 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC15.5■□□□□ 0.07
COL5A1P20908 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
COL5A1P20908 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.5■□□□□ 0.07
COL5A1P20908 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL5A1P20908 BCYRN1-201ENST00000418539 200 ntBASIC15.5■□□□□ 0.07
COL5A1P20908 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.5■□□□□ 0.07
COL5A1P20908 AC068587.3-201ENST00000526613 355 ntBASIC15.5■□□□□ 0.07
COL5A1P20908 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
COL5A1P20908 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.5■□□□□ 0.07
COL5A1P20908 MIR4538-201ENST00000581377 78 ntBASIC15.5■□□□□ 0.07
COL5A1P20908 AL022328.1-201ENST00000610050 478 ntBASIC15.5■□□□□ 0.07
COL5A1P20908 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.5■□□□□ 0.07
COL5A1P20908 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.5■□□□□ 0.07
COL5A1P20908 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL5A1P20908 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.49■□□□□ 0.07
COL5A1P20908 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL5A1P20908 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL5A1P20908 U82695.1-201ENST00000635752 1889 ntBASIC15.49■□□□□ 0.07
COL5A1P20908 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.49■□□□□ 0.07
COL5A1P20908 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.49■□□□□ 0.07
COL5A1P20908 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
COL5A1P20908 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.49■□□□□ 0.07
COL5A1P20908 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.49■□□□□ 0.07
COL5A1P20908 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
COL5A1P20908 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
COL5A1P20908 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL5A1P20908 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL5A1P20908 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.49■□□□□ 0.07
COL5A1P20908 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
COL5A1P20908 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL5A1P20908 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
COL5A1P20908 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.49■□□□□ 0.07
COL5A1P20908 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
COL5A1P20908 TOMM22P5-201ENST00000416399 439 ntBASIC15.49■□□□□ 0.07
COL5A1P20908 AC099336.1-201ENST00000417053 1171 ntBASIC15.49■□□□□ 0.07
COL5A1P20908 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.49■□□□□ 0.07
COL5A1P20908 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.49■□□□□ 0.07
COL5A1P20908 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.49■□□□□ 0.07
COL5A1P20908 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.49■□□□□ 0.07
COL5A1P20908 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.49■□□□□ 0.07
COL5A1P20908 CU634019.7-201ENST00000624153 1185 ntBASIC15.49■□□□□ 0.07
COL5A1P20908 FP236241.2-201ENST00000624906 1185 ntBASIC15.49■□□□□ 0.07
COL5A1P20908 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL5A1P20908 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL5A1P20908 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
COL5A1P20908 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.49■□□□□ 0.07
COL5A1P20908 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
COL5A1P20908 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.49■□□□□ 0.07
COL5A1P20908 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.49■□□□□ 0.07
COL5A1P20908 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL5A1P20908 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
COL5A1P20908 INTS4P2-202ENST00000614726 2019 ntBASIC15.48■□□□□ 0.07
COL5A1P20908 AC022211.2-201ENST00000585075 2527 ntBASIC15.48■□□□□ 0.07
COL5A1P20908 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.48■□□□□ 0.07
COL5A1P20908 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 MIR1908-201ENST00000410394 80 ntBASIC15.48■□□□□ 0.07
COL5A1P20908 FAM21FP-201ENST00000426241 1131 ntBASIC15.48■□□□□ 0.07
COL5A1P20908 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.48■□□□□ 0.07
COL5A1P20908 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.48■□□□□ 0.07
COL5A1P20908 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
COL5A1P20908 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.48■□□□□ 0.07
COL5A1P20908 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.48■□□□□ 0.07
COL5A1P20908 AL583810.1-201ENST00000553344 1045 ntBASIC15.48■□□□□ 0.07
COL5A1P20908 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC15.48■□□□□ 0.07
COL5A1P20908 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.48■□□□□ 0.07
COL5A1P20908 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.48■□□□□ 0.07
COL5A1P20908 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.48■□□□□ 0.07
COL5A1P20908 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
COL5A1P20908 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.48■□□□□ 0.07
COL5A1P20908 AC133539.2-201ENST00000604757 467 ntBASIC15.48■□□□□ 0.07
COL5A1P20908 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.48■□□□□ 0.07
COL5A1P20908 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 GGT3P-204ENST00000453783 1664 ntBASIC15.48■□□□□ 0.07
COL5A1P20908 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.48■□□□□ 0.07
COL5A1P20908 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
COL5A1P20908 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.48■□□□□ 0.07
COL5A1P20908 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.48■□□□□ 0.07
COL5A1P20908 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
COL5A1P20908 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.48■□□□□ 0.07
COL5A1P20908 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.48■□□□□ 0.07
COL5A1P20908 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms