Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 MIR4525-201ENST00000580000 75 ntBASIC21.58■■□□□ 1.05
CSB-PGBD3P0DP91 AC015936.2-201ENST00000593177 259 ntBASIC21.58■■□□□ 1.05
CSB-PGBD3P0DP91 AC010319.3-201ENST00000597028 470 ntBASIC21.58■■□□□ 1.05
CSB-PGBD3P0DP91 BNIP3P29-201ENST00000598302 571 ntBASIC21.58■■□□□ 1.05
CSB-PGBD3P0DP91 AC011447.5-201ENST00000616168 564 ntBASIC21.58■■□□□ 1.05
CSB-PGBD3P0DP91 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
CSB-PGBD3P0DP91 FZD10-202ENST00000539839 3282 ntBASIC21.58■■□□□ 1.05
CSB-PGBD3P0DP91 OR6D1P-203ENST00000641209 4860 ntBASIC21.58■■□□□ 1.05
CSB-PGBD3P0DP91 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
CSB-PGBD3P0DP91 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
CSB-PGBD3P0DP91 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CSB-PGBD3P0DP91 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CSB-PGBD3P0DP91 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
CSB-PGBD3P0DP91 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CSB-PGBD3P0DP91 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.58■■□□□ 1.04
CSB-PGBD3P0DP91 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
CSB-PGBD3P0DP91 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC21.58■■□□□ 1.04
CSB-PGBD3P0DP91 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
CSB-PGBD3P0DP91 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CSB-PGBD3P0DP91 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 RARRES2P5-201ENST00000564013 466 ntBASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CSB-PGBD3P0DP91 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 ANKRD19P-201ENST00000338192 862 ntBASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 BOLA2P3-201ENST00000404566 256 ntBASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 PTK7-212ENST00000476760 902 ntTSL 2 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CSB-PGBD3P0DP91 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CSB-PGBD3P0DP91 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms