Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL1A1P02452 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL1A1P02452 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC19.53■□□□□ 0.72
COL1A1P02452 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC19.53■□□□□ 0.72
COL1A1P02452 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC19.53■□□□□ 0.72
COL1A1P02452 RN7SL752P-201ENST00000463779 287 ntBASIC19.53■□□□□ 0.72
COL1A1P02452 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL1A1P02452 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL1A1P02452 DOC2GP-202ENST00000514950 1163 ntBASIC19.53■□□□□ 0.72
COL1A1P02452 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC19.53■□□□□ 0.72
COL1A1P02452 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL1A1P02452 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC19.53■□□□□ 0.72
COL1A1P02452 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC19.53■□□□□ 0.72
COL1A1P02452 AC008494.3-201ENST00000606615 944 ntBASIC19.53■□□□□ 0.72
COL1A1P02452 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.53■□□□□ 0.72
COL1A1P02452 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL1A1P02452 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
COL1A1P02452 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
COL1A1P02452 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL1A1P02452 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.52■□□□□ 0.72
COL1A1P02452 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
COL1A1P02452 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
COL1A1P02452 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL1A1P02452 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
COL1A1P02452 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.52■□□□□ 0.72
COL1A1P02452 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL1A1P02452 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC19.52■□□□□ 0.72
COL1A1P02452 AC023310.3-201ENST00000557027 670 ntBASIC19.52■□□□□ 0.72
COL1A1P02452 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC19.52■□□□□ 0.72
COL1A1P02452 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC19.52■□□□□ 0.72
COL1A1P02452 AC100756.1-201ENST00000562736 682 ntBASIC19.52■□□□□ 0.72
COL1A1P02452 AC138749.3-201ENST00000567691 622 ntBASIC19.52■□□□□ 0.72
COL1A1P02452 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC19.52■□□□□ 0.72
COL1A1P02452 CHCHD2P3-201ENST00000603038 451 ntBASIC19.52■□□□□ 0.72
COL1A1P02452 AC116165.1-201ENST00000611806 668 ntBASIC19.52■□□□□ 0.72
COL1A1P02452 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL1A1P02452 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.52■□□□□ 0.71
COL1A1P02452 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL1A1P02452 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL1A1P02452 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.52■□□□□ 0.71
COL1A1P02452 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL1A1P02452 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL1A1P02452 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL1A1P02452 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC19.51■□□□□ 0.71
COL1A1P02452 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC19.51■□□□□ 0.71
COL1A1P02452 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL1A1P02452 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
COL1A1P02452 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC19.51■□□□□ 0.71
COL1A1P02452 AC092337.1-201ENST00000568699 1129 ntBASIC19.51■□□□□ 0.71
COL1A1P02452 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
COL1A1P02452 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC19.51■□□□□ 0.71
COL1A1P02452 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL1A1P02452 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
COL1A1P02452 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL1A1P02452 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC19.51■□□□□ 0.71
COL1A1P02452 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
COL1A1P02452 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.51■□□□□ 0.71
COL1A1P02452 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL1A1P02452 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL1A1P02452 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL1A1P02452 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL1A1P02452 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL1A1P02452 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
COL1A1P02452 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL1A1P02452 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL1A1P02452 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
COL1A1P02452 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL1A1P02452 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
COL1A1P02452 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC19.5■□□□□ 0.71
COL1A1P02452 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC19.5■□□□□ 0.71
COL1A1P02452 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
COL1A1P02452 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
COL1A1P02452 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
COL1A1P02452 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC19.5■□□□□ 0.71
COL1A1P02452 AC132938.2-201ENST00000579188 680 ntBASIC19.5■□□□□ 0.71
COL1A1P02452 AL391069.4-201ENST00000609583 481 ntBASIC19.5■□□□□ 0.71
COL1A1P02452 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
COL1A1P02452 AL591163.1-201ENST00000641757 987 ntBASIC19.5■□□□□ 0.71
COL1A1P02452 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms