Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
FOXN3O00409 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXN3O00409 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXN3O00409 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.58■□□□□ 0.4
FOXN3O00409 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.58■□□□□ 0.4
FOXN3O00409 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.58■□□□□ 0.4
FOXN3O00409 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXN3O00409 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
FOXN3O00409 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXN3O00409 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXN3O00409 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXN3O00409 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
FOXN3O00409 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXN3O00409 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXN3O00409 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
FOXN3O00409 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
FOXN3O00409 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.57■□□□□ 0.4
FOXN3O00409 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
FOXN3O00409 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXN3O00409 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.57■□□□□ 0.4
FOXN3O00409 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXN3O00409 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.57■□□□□ 0.4
FOXN3O00409 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.57■□□□□ 0.4
FOXN3O00409 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.57■□□□□ 0.4
FOXN3O00409 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.57■□□□□ 0.4
FOXN3O00409 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
FOXN3O00409 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.57■□□□□ 0.4
FOXN3O00409 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
FOXN3O00409 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
FOXN3O00409 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXN3O00409 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
FOXN3O00409 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
FOXN3O00409 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.56■□□□□ 0.4
FOXN3O00409 AC073439.1-201ENST00000624121 1774 ntBASIC17.56■□□□□ 0.4
FOXN3O00409 CDC14C-201ENST00000428251 1719 ntBASIC17.56■□□□□ 0.4
FOXN3O00409 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
FOXN3O00409 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXN3O00409 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
FOXN3O00409 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXN3O00409 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 AC112504.1-201ENST00000623415 1841 ntBASIC17.56■□□□□ 0.4
FOXN3O00409 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
FOXN3O00409 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
FOXN3O00409 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.56■□□□□ 0.4
FOXN3O00409 WASH6P-202ENST00000359512 1437 ntBASIC17.55■□□□□ 0.4
FOXN3O00409 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.55■□□□□ 0.4
FOXN3O00409 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
FOXN3O00409 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.55■□□□□ 0.4
FOXN3O00409 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.55■□□□□ 0.4
FOXN3O00409 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
FOXN3O00409 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
FOXN3O00409 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.55■□□□□ 0.4
FOXN3O00409 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.55■□□□□ 0.4
FOXN3O00409 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.55■□□□□ 0.4
FOXN3O00409 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.55■□□□□ 0.4
FOXN3O00409 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.55■□□□□ 0.4
FOXN3O00409 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.55■□□□□ 0.4
FOXN3O00409 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.55■□□□□ 0.4
FOXN3O00409 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.55■□□□□ 0.4
FOXN3O00409 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms