Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 HCG24-202ENST00000414398 717 ntTSL 3 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 AC022210.1-201ENST00000449856 793 ntBASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 RNA5SP410-201ENST00000516285 106 ntBASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 AL023806.1-201ENST00000603994 1649 ntBASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 AL080243.2-201ENST00000418783 582 ntBASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 AC098859.1-201ENST00000502915 1238 ntBASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 AC093004.1-201ENST00000508850 424 ntBASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 AC007431.3-201ENST00000623221 587 ntBASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 AC073439.1-201ENST00000624121 1774 ntBASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMD1Q9UGP4 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 AC092658.1-201ENST00000505836 891 ntBASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 NOP2-211ENST00000540228 668 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 AC044860.1-202ENST00000559481 777 ntBASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 AL606495.2-201ENST00000605867 535 ntBASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 AC004790.1-201ENST00000612686 536 ntBASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMD1Q9UGP4 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms