Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 ACTBP11-201ENST00000436287 1126 ntBASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 AC010319.3-201ENST00000597028 470 ntBASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 AL391069.4-201ENST00000609583 481 ntBASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 MIR6787-201ENST00000616675 61 ntBASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 Z97205.2-201ENST00000564697 1639 ntBASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 LINC01144-201ENST00000626198 1710 ntBASIC20.56■□□□□ 0.88
CCDC87Q9NVE4 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 LINC01115-203ENST00000606068 577 ntBASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 AL133373.2-201ENST00000623187 2828 ntBASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC87Q9NVE4 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 GGT3P-204ENST00000453783 1664 ntBASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 USP32P1-208ENST00000506594 1164 ntBASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 SUOX-214ENST00000551841 906 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 RN7SL219P-201ENST00000582872 296 ntBASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 KRT8P44-201ENST00000441609 1350 ntBASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC87Q9NVE4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC87Q9NVE4 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC87Q9NVE4 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC87Q9NVE4 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC87Q9NVE4 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC87Q9NVE4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC87Q9NVE4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms