Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
CISHQ9NSE2 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CISHQ9NSE2 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CISHQ9NSE2 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.51■□□□□ 0.39
CISHQ9NSE2 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 MIR346-201ENST00000362234 95 ntBASIC17.5■□□□□ 0.39
CISHQ9NSE2 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 AC142381.1-201ENST00000426099 345 ntBASIC17.5■□□□□ 0.39
CISHQ9NSE2 AC004967.1-201ENST00000453589 447 ntBASIC17.5■□□□□ 0.39
CISHQ9NSE2 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 AP000344.2-201ENST00000512987 629 ntBASIC17.5■□□□□ 0.39
CISHQ9NSE2 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 KRT8P23-201ENST00000560090 1207 ntBASIC17.5■□□□□ 0.39
CISHQ9NSE2 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CISHQ9NSE2 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.5■□□□□ 0.39
CISHQ9NSE2 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 UXT-AS1-201ENST00000590504 1525 ntBASIC17.49■□□□□ 0.39
CISHQ9NSE2 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 AP006288.1-201ENST00000446065 395 ntBASIC17.49■□□□□ 0.39
CISHQ9NSE2 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.49■□□□□ 0.39
CISHQ9NSE2 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CISHQ9NSE2 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.49■□□□□ 0.39
CISHQ9NSE2 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CISHQ9NSE2 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CISHQ9NSE2 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CISHQ9NSE2 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CISHQ9NSE2 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CISHQ9NSE2 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.48■□□□□ 0.39
CISHQ9NSE2 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CISHQ9NSE2 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.48■□□□□ 0.39
CISHQ9NSE2 AL596087.1-201ENST00000400979 1969 ntBASIC17.48■□□□□ 0.39
CISHQ9NSE2 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CISHQ9NSE2 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CISHQ9NSE2 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CISHQ9NSE2 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CISHQ9NSE2 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.48■□□□□ 0.39
CISHQ9NSE2 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CISHQ9NSE2 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CISHQ9NSE2 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms