Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 AC079781.3-201ENST00000449110 356 ntBASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 LINC01711-201ENST00000598340 967 ntBASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM56Q9BRZ2 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
TRIM56Q9BRZ2 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.83■□□□□ 0.29
TRIM56Q9BRZ2 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM56Q9BRZ2 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM56Q9BRZ2 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
TRIM56Q9BRZ2 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM56Q9BRZ2 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM56Q9BRZ2 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM56Q9BRZ2 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 AC018712.1-201ENST00000455767 687 ntBASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 OR7E47P-204ENST00000575924 449 ntBASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 AC068418.2-201ENST00000577309 3703 ntBASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
TRIM56Q9BRZ2 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 AL365203.3-201ENST00000609742 2057 ntBASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 REXO1L8P-201ENST00000604378 1897 ntBASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 FAM197Y8-203ENST00000450145 560 ntBASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 AC073648.2-201ENST00000510116 352 ntBASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 AC136632.2-201ENST00000512891 861 ntBASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 AL049840.3-201ENST00000602669 611 ntBASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 AC104692.2-201ENST00000603054 253 ntBASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms