Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.82■□□□□ 0.12
VMP1Q96GC9 LINC02012-201ENST00000608206 1725 ntBASIC15.82■□□□□ 0.12
VMP1Q96GC9 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VMP1Q96GC9 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 AC018845.2-201ENST00000568326 409 ntBASIC15.81■□□□□ 0.12
VMP1Q96GC9 AC023511.2-201ENST00000618803 211 ntBASIC15.81■□□□□ 0.12
VMP1Q96GC9 AC007064.4-201ENST00000637740 555 ntBASIC15.81■□□□□ 0.12
VMP1Q96GC9 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 AC068587.6-202ENST00000641839 5619 ntBASIC15.81■□□□□ 0.12
VMP1Q96GC9 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.81■□□□□ 0.12
VMP1Q96GC9 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VMP1Q96GC9 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 BX842568.4-201ENST00000421222 227 ntBASIC15.8■□□□□ 0.12
VMP1Q96GC9 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 RHOQP3-201ENST00000437982 621 ntBASIC15.8■□□□□ 0.12
VMP1Q96GC9 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 FAM185BP-201ENST00000443595 716 ntBASIC15.8■□□□□ 0.12
VMP1Q96GC9 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 AC124947.2-201ENST00000547118 1133 ntBASIC15.8■□□□□ 0.12
VMP1Q96GC9 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VMP1Q96GC9 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.8■□□□□ 0.12
VMP1Q96GC9 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 FRMD8P1-201ENST00000440433 1524 ntBASIC15.79■□□□□ 0.12
VMP1Q96GC9 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.79■□□□□ 0.12
VMP1Q96GC9 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms