Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 MCCD1P1-208ENST00000445732 328 ntBASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 FDX2-207ENST00000494368 584 ntTSL 4 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC28AQ8IWP9 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 CYP51A1P1-201ENST00000492267 1507 ntBASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 TBC1D3P2-202ENST00000577902 1649 ntBASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
CCDC28AQ8IWP9 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms