Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 GZMM-202ENST00000592501 941 ntTSL 3 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 AC073347.1-201ENST00000421633 2643 ntBASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PPP4R4Q6NUP7 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
PPP4R4Q6NUP7 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
PPP4R4Q6NUP7 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
PPP4R4Q6NUP7 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PPP4R4Q6NUP7 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
PPP4R4Q6NUP7 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
PPP4R4Q6NUP7 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.13
PPP4R4Q6NUP7 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PPP4R4Q6NUP7 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.83■□□□□ 0.13
PPP4R4Q6NUP7 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 MTDHP3-201ENST00000594186 672 ntBASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PPP4R4Q6NUP7 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 C8orf49-201ENST00000525043 1968 ntBASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 NORAD-201ENST00000565493 5339 ntBASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 AC013268.4-201ENST00000637413 2228 ntBASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 AKR1C7P-201ENST00000305623 895 ntBASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PPP4R4Q6NUP7 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms