Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL28A1Q2UY09 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 AL596257.1-201ENST00000641463 2694 ntBASIC15.82■□□□□ 0.12
COL28A1Q2UY09 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 AC092933.1-201ENST00000393644 945 ntBASIC15.82■□□□□ 0.12
COL28A1Q2UY09 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 AC087163.2-201ENST00000457299 853 ntBASIC15.82■□□□□ 0.12
COL28A1Q2UY09 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 AL138828.2-201ENST00000615812 383 ntBASIC15.82■□□□□ 0.12
COL28A1Q2UY09 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
COL28A1Q2UY09 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 NFIC-211ENST00000641145 8399 ntBASIC15.81■□□□□ 0.12
COL28A1Q2UY09 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 ACTG1P4-201ENST00000425123 1122 ntBASIC15.81■□□□□ 0.12
COL28A1Q2UY09 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 MIR6787-201ENST00000616675 61 ntBASIC15.81■□□□□ 0.12
COL28A1Q2UY09 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.81■□□□□ 0.12
COL28A1Q2UY09 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL28A1Q2UY09 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms