Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AC023310.3-201ENST00000557027 670 ntBASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 AC100756.1-201ENST00000562736 682 ntBASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 AC138749.3-201ENST00000567691 622 ntBASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 AC140912.1-201ENST00000577171 1054 ntBASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 AC116165.1-201ENST00000611806 668 ntBASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 5S_rRNA.22-201ENST00000614916 106 ntBASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SHROOM1Q2M3G4 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 ALOX12P2-203ENST00000570921 1945 ntBASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 AC098850.1-201ENST00000419919 790 ntBASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 AC007274.1-201ENST00000439805 662 ntBASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 AC027307.3-201ENST00000594262 1100 ntBASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 SRD5A3P1-201ENST00000603021 949 ntBASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.02■□□□□ 0.64
SHROOM1Q2M3G4 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SHROOM1Q2M3G4 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SHROOM1Q2M3G4 AC079328.2-201ENST00000561241 3354 ntBASIC19.02■□□□□ 0.63
SHROOM1Q2M3G4 BTBD7P1-201ENST00000447253 1453 ntBASIC19.02■□□□□ 0.63
SHROOM1Q2M3G4 AC138969.3-201ENST00000546612 1459 ntBASIC19.02■□□□□ 0.63
SHROOM1Q2M3G4 AC138932.2-201ENST00000548268 1459 ntBASIC19.02■□□□□ 0.63
SHROOM1Q2M3G4 AC126755.4-201ENST00000549796 1459 ntBASIC19.02■□□□□ 0.63
SHROOM1Q2M3G4 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SHROOM1Q2M3G4 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SHROOM1Q2M3G4 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 AL353779.1-201ENST00000434793 351 ntBASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 CD81-207ENST00000481687 890 ntTSL 2 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHROOM1Q2M3G4 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHROOM1Q2M3G4 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SHROOM1Q2M3G4 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHROOM1Q2M3G4 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19■□□□□ 0.63
SHROOM1Q2M3G4 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
SHROOM1Q2M3G4 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SHROOM1Q2M3G4 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHROOM1Q2M3G4 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHROOM1Q2M3G4 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19■□□□□ 0.63
SHROOM1Q2M3G4 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
SHROOM1Q2M3G4 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms