Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
CUX1P39880 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
CUX1P39880 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC26.98■■□□□ 1.91
CUX1P39880 TPI1-206ENST00000488464 791 ntTSL 5 BASIC26.98■■□□□ 1.91
CUX1P39880 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC26.98■■□□□ 1.91
CUX1P39880 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC26.98■■□□□ 1.91
CUX1P39880 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CUX1P39880 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CUX1P39880 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
CUX1P39880 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
CUX1P39880 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
CUX1P39880 AC139713.2-201ENST00000641328 2723 ntBASIC26.98■■□□□ 1.91
CUX1P39880 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC26.98■■□□□ 1.91
CUX1P39880 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CUX1P39880 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CUX1P39880 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
CUX1P39880 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CUX1P39880 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CUX1P39880 AL355864.2-201ENST00000447420 863 ntBASIC26.97■■□□□ 1.91
CUX1P39880 RPL13AP20-201ENST00000459725 609 ntBASIC26.97■■□□□ 1.91
CUX1P39880 AC243562.2-201ENST00000561247 970 ntBASIC26.97■■□□□ 1.91
CUX1P39880 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC26.97■■□□□ 1.91
CUX1P39880 AC000095.1-201ENST00000603208 874 ntBASIC26.97■■□□□ 1.91
CUX1P39880 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC26.97■■□□□ 1.91
CUX1P39880 USE1-206ENST00000595101 1776 ntTSL 2 BASIC26.97■■□□□ 1.91
CUX1P39880 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CUX1P39880 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CUX1P39880 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
CUX1P39880 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC26.97■■□□□ 1.91
CUX1P39880 GCK-202ENST00000345378 2421 ntTSL 2 BASIC26.97■■□□□ 1.91
CUX1P39880 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
CUX1P39880 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC26.97■■□□□ 1.91
CUX1P39880 LOX-206ENST00000639739 1626 ntTSL 5 BASIC26.97■■□□□ 1.91
CUX1P39880 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CUX1P39880 AC009053.2-201ENST00000563701 2365 ntBASIC26.97■■□□□ 1.91
CUX1P39880 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
CUX1P39880 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC26.97■■□□□ 1.91
CUX1P39880 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
CUX1P39880 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CUX1P39880 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CUX1P39880 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC26.96■■□□□ 1.91
CUX1P39880 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC26.96■■□□□ 1.91
CUX1P39880 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC26.96■■□□□ 1.91
CUX1P39880 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CUX1P39880 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC26.96■■□□□ 1.91
CUX1P39880 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC26.96■■□□□ 1.91
CUX1P39880 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
CUX1P39880 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
CUX1P39880 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
CUX1P39880 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CUX1P39880 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC26.96■■□□□ 1.91
CUX1P39880 RERG-209ENST00000546331 1383 ntTSL 2 BASIC26.96■■□□□ 1.91
CUX1P39880 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
CUX1P39880 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
CUX1P39880 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
CUX1P39880 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
CUX1P39880 AC136604.1-201ENST00000418535 575 ntBASIC26.95■■□□□ 1.91
CUX1P39880 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC26.95■■□□□ 1.91
CUX1P39880 AC134915.1-201ENST00000426461 574 ntBASIC26.95■■□□□ 1.91
CUX1P39880 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC26.95■■□□□ 1.91
CUX1P39880 GOLGA2P4-201ENST00000441462 777 ntBASIC26.95■■□□□ 1.91
CUX1P39880 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC26.95■■□□□ 1.91
CUX1P39880 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC26.95■■□□□ 1.91
CUX1P39880 ENPP7P5-201ENST00000541031 1031 ntBASIC26.95■■□□□ 1.91
CUX1P39880 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC26.95■■□□□ 1.91
CUX1P39880 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC26.95■■□□□ 1.91
CUX1P39880 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC26.95■■□□□ 1.91
CUX1P39880 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
CUX1P39880 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.91
CUX1P39880 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.91
CUX1P39880 AC005915.1-201ENST00000624912 2018 ntBASIC26.95■■□□□ 1.91
CUX1P39880 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC26.95■■□□□ 1.9
CUX1P39880 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC26.95■■□□□ 1.9
CUX1P39880 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.9
CUX1P39880 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC26.95■■□□□ 1.9
CUX1P39880 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC26.95■■□□□ 1.9
CUX1P39880 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
CUX1P39880 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC26.95■■□□□ 1.9
CUX1P39880 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
CUX1P39880 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
CUX1P39880 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
CUX1P39880 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC26.95■■□□□ 1.9
CUX1P39880 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC26.95■■□□□ 1.9
CUX1P39880 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC26.95■■□□□ 1.9
CUX1P39880 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC26.95■■□□□ 1.9
CUX1P39880 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
CUX1P39880 ATF5-205ENST00000600336 682 ntTSL 2 BASIC26.95■■□□□ 1.9
CUX1P39880 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
CUX1P39880 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC26.94■■□□□ 1.9
CUX1P39880 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CUX1P39880 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
CUX1P39880 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CUX1P39880 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC26.94■■□□□ 1.9
CUX1P39880 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC26.94■■□□□ 1.9
CUX1P39880 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CUX1P39880 C1QBPP1-201ENST00000400117 770 ntBASIC26.94■■□□□ 1.9
CUX1P39880 BAATP1-201ENST00000412284 1225 ntBASIC26.94■■□□□ 1.9
CUX1P39880 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC26.94■■□□□ 1.9
CUX1P39880 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC26.94■■□□□ 1.9
CUX1P39880 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC26.94■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms