Protein–RNA interactions for Protein: P31271

HOXA13, Homeobox protein Hox-A13, humanhuman

Predicted RBP Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA13P31271 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA13P31271 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXA13P31271 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
HOXA13P31271 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
HOXA13P31271 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXA13P31271 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.65■□□□□ 0.58
HOXA13P31271 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXA13P31271 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.65■□□□□ 0.58
HOXA13P31271 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXA13P31271 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXA13P31271 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.65■□□□□ 0.58
HOXA13P31271 LITAF-210ENST00000571976 548 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXA13P31271 LITAF-214ENST00000574703 486 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXA13P31271 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.65■□□□□ 0.58
HOXA13P31271 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
HOXA13P31271 RN7SL828P-201ENST00000607615 303 ntBASIC18.65■□□□□ 0.58
HOXA13P31271 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXA13P31271 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
HOXA13P31271 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HOXA13P31271 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.65■□□□□ 0.58
HOXA13P31271 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA13P31271 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HOXA13P31271 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.64■□□□□ 0.58
HOXA13P31271 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HOXA13P31271 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HOXA13P31271 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.64■□□□□ 0.58
HOXA13P31271 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA13P31271 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.64■□□□□ 0.57
HOXA13P31271 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
HOXA13P31271 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA13P31271 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.64■□□□□ 0.57
HOXA13P31271 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.64■□□□□ 0.57
HOXA13P31271 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA13P31271 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA13P31271 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
HOXA13P31271 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HOXA13P31271 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HOXA13P31271 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HOXA13P31271 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.64■□□□□ 0.57
HOXA13P31271 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA13P31271 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA13P31271 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA13P31271 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HOXA13P31271 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.64■□□□□ 0.57
HOXA13P31271 MIR3197-201ENST00000582241 73 ntBASIC18.64■□□□□ 0.57
HOXA13P31271 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.64■□□□□ 0.57
HOXA13P31271 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA13P31271 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA13P31271 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA13P31271 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA13P31271 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.64■□□□□ 0.57
HOXA13P31271 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.64■□□□□ 0.57
HOXA13P31271 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA13P31271 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC18.63■□□□□ 0.57
HOXA13P31271 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.63■□□□□ 0.57
HOXA13P31271 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC18.63■□□□□ 0.57
HOXA13P31271 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA13P31271 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.63■□□□□ 0.57
HOXA13P31271 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA13P31271 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.63■□□□□ 0.57
HOXA13P31271 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA13P31271 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HOXA13P31271 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA13P31271 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA13P31271 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HOXA13P31271 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA13P31271 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.63■□□□□ 0.57
HOXA13P31271 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA13P31271 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA13P31271 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.63■□□□□ 0.57
HOXA13P31271 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA13P31271 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.63■□□□□ 0.57
HOXA13P31271 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.63■□□□□ 0.57
HOXA13P31271 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC18.63■□□□□ 0.57
HOXA13P31271 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC18.63■□□□□ 0.57
HOXA13P31271 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
HOXA13P31271 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.63■□□□□ 0.57
HOXA13P31271 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA13P31271 AC100757.3-201ENST00000622361 1406 ntBASIC18.63■□□□□ 0.57
HOXA13P31271 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
HOXA13P31271 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms