Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.76■□□□□ 0.59
SMARCA1P28370 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.76■□□□□ 0.59
SMARCA1P28370 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.76■□□□□ 0.59
SMARCA1P28370 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SMARCA1P28370 AC107890.1-201ENST00000422478 521 ntBASIC18.76■□□□□ 0.59
SMARCA1P28370 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.76■□□□□ 0.59
SMARCA1P28370 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.76■□□□□ 0.59
SMARCA1P28370 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.76■□□□□ 0.59
SMARCA1P28370 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
SMARCA1P28370 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.76■□□□□ 0.59
SMARCA1P28370 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.76■□□□□ 0.59
SMARCA1P28370 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.76■□□□□ 0.59
SMARCA1P28370 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCA1P28370 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SMARCA1P28370 AL118508.1-201ENST00000613502 2345 ntBASIC18.75■□□□□ 0.59
SMARCA1P28370 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
SMARCA1P28370 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.75■□□□□ 0.59
SMARCA1P28370 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.75■□□□□ 0.59
SMARCA1P28370 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.75■□□□□ 0.59
SMARCA1P28370 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
SMARCA1P28370 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.75■□□□□ 0.59
SMARCA1P28370 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.75■□□□□ 0.59
SMARCA1P28370 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 SPDYE17-201ENST00000412399 783 ntBASIC18.75■□□□□ 0.59
SMARCA1P28370 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.75■□□□□ 0.59
SMARCA1P28370 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.75■□□□□ 0.59
SMARCA1P28370 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.75■□□□□ 0.59
SMARCA1P28370 AC027796.2-201ENST00000575326 344 ntBASIC18.75■□□□□ 0.59
SMARCA1P28370 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.75■□□□□ 0.59
SMARCA1P28370 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.75■□□□□ 0.59
SMARCA1P28370 AL158211.3-201ENST00000607385 239 ntBASIC18.75■□□□□ 0.59
SMARCA1P28370 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.75■□□□□ 0.59
SMARCA1P28370 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.75■□□□□ 0.59
SMARCA1P28370 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.75■□□□□ 0.59
SMARCA1P28370 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SMARCA1P28370 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCA1P28370 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.74■□□□□ 0.59
SMARCA1P28370 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SMARCA1P28370 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SMARCA1P28370 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.74■□□□□ 0.59
SMARCA1P28370 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.74■□□□□ 0.59
SMARCA1P28370 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 MIR648-201ENST00000385046 94 ntBASIC18.74■□□□□ 0.59
SMARCA1P28370 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.74■□□□□ 0.59
SMARCA1P28370 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.74■□□□□ 0.59
SMARCA1P28370 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
SMARCA1P28370 CYMP-203ENST00000474680 1263 ntBASIC18.74■□□□□ 0.59
SMARCA1P28370 HLA-V-204ENST00000476601 1289 ntBASIC18.74■□□□□ 0.59
SMARCA1P28370 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.74■□□□□ 0.59
SMARCA1P28370 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.74■□□□□ 0.59
SMARCA1P28370 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCA1P28370 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms