Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 AL031731.1-201ENST00000642131 2094 ntBASIC18.21■□□□□ 0.51
TPM1P09493 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 AC022532.1-201ENST00000624563 1728 ntBASIC18.21■□□□□ 0.51
TPM1P09493 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
TPM1P09493 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.21■□□□□ 0.51
TPM1P09493 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
TPM1P09493 IGHV3-47-201ENST00000425060 335 ntBASIC18.21■□□□□ 0.51
TPM1P09493 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.21■□□□□ 0.51
TPM1P09493 RN7SL850P-201ENST00000579959 291 ntBASIC18.21■□□□□ 0.51
TPM1P09493 AP002414.4-201ENST00000589764 1148 ntBASIC18.21■□□□□ 0.51
TPM1P09493 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.21■□□□□ 0.51
TPM1P09493 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
TPM1P09493 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.21■□□□□ 0.51
TPM1P09493 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC18.21■□□□□ 0.51
TPM1P09493 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.21■□□□□ 0.51
TPM1P09493 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC18.21■□□□□ 0.51
TPM1P09493 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC18.21■□□□□ 0.51
TPM1P09493 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TPM1P09493 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC18.21■□□□□ 0.51
TPM1P09493 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
TPM1P09493 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
TPM1P09493 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.5
TPM1P09493 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.5
TPM1P09493 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
TPM1P09493 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
TPM1P09493 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
TPM1P09493 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.2■□□□□ 0.5
TPM1P09493 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
TPM1P09493 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
TPM1P09493 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.2■□□□□ 0.5
TPM1P09493 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
TPM1P09493 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.2■□□□□ 0.5
TPM1P09493 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.2■□□□□ 0.5
TPM1P09493 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
TPM1P09493 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.2■□□□□ 0.5
TPM1P09493 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.2■□□□□ 0.5
TPM1P09493 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.2■□□□□ 0.5
TPM1P09493 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.2■□□□□ 0.5
TPM1P09493 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.2■□□□□ 0.5
TPM1P09493 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.2■□□□□ 0.5
TPM1P09493 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.2■□□□□ 0.5
TPM1P09493 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
TPM1P09493 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
TPM1P09493 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 AL512652.2-201ENST00000625156 1716 ntBASIC18.2■□□□□ 0.5
TPM1P09493 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
TPM1P09493 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
TPM1P09493 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM1P09493 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
TPM1P09493 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM1P09493 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
TPM1P09493 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM1P09493 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
TPM1P09493 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM1P09493 AC144831.1-201ENST00000573312 2656 ntBASIC18.19■□□□□ 0.5
TPM1P09493 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
TPM1P09493 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.19■□□□□ 0.5
TPM1P09493 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TPM1P09493 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM1P09493 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TPM1P09493 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
TPM1P09493 AL031133.1-201ENST00000406807 723 ntBASIC18.19■□□□□ 0.5
TPM1P09493 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms