Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.92■□□□□ 0.14
HOXC4P09017 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.92■□□□□ 0.14
HOXC4P09017 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 AGGF1P2-201ENST00000426656 2106 ntBASIC15.92■□□□□ 0.14
HOXC4P09017 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.92■□□□□ 0.14
HOXC4P09017 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HOXC4P09017 CYP4F24P-201ENST00000586049 1580 ntBASIC15.92■□□□□ 0.14
HOXC4P09017 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.91■□□□□ 0.14
HOXC4P09017 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.91■□□□□ 0.14
HOXC4P09017 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.91■□□□□ 0.14
HOXC4P09017 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.91■□□□□ 0.14
HOXC4P09017 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.91■□□□□ 0.14
HOXC4P09017 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.91■□□□□ 0.14
HOXC4P09017 EEF1DP4-201ENST00000446006 880 ntBASIC15.91■□□□□ 0.14
HOXC4P09017 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.91■□□□□ 0.14
HOXC4P09017 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.91■□□□□ 0.14
HOXC4P09017 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 AC008738.7-201ENST00000609744 511 ntBASIC15.91■□□□□ 0.14
HOXC4P09017 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.91■□□□□ 0.14
HOXC4P09017 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.91■□□□□ 0.14
HOXC4P09017 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.91■□□□□ 0.14
HOXC4P09017 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.91■□□□□ 0.14
HOXC4P09017 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.91■□□□□ 0.14
HOXC4P09017 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.91■□□□□ 0.14
HOXC4P09017 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.91■□□□□ 0.14
HOXC4P09017 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HOXC4P09017 REXO1L8P-201ENST00000604378 1897 ntBASIC15.91■□□□□ 0.14
HOXC4P09017 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.91■□□□□ 0.14
HOXC4P09017 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 AC080080.1-201ENST00000625121 2420 ntBASIC15.9■□□□□ 0.14
HOXC4P09017 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.9■□□□□ 0.14
HOXC4P09017 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
HOXC4P09017 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.9■□□□□ 0.14
HOXC4P09017 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 FLJ38576-201ENST00000623820 2459 ntBASIC15.9■□□□□ 0.14
HOXC4P09017 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
HOXC4P09017 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 PIN1P1-201ENST00000412108 996 ntBASIC15.9■□□□□ 0.14
HOXC4P09017 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.9■□□□□ 0.14
HOXC4P09017 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.9■□□□□ 0.14
HOXC4P09017 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.9■□□□□ 0.14
HOXC4P09017 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.9■□□□□ 0.14
HOXC4P09017 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.9■□□□□ 0.14
HOXC4P09017 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.9■□□□□ 0.14
HOXC4P09017 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.9■□□□□ 0.14
HOXC4P09017 AC243562.2-201ENST00000561247 970 ntBASIC15.9■□□□□ 0.14
HOXC4P09017 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.9■□□□□ 0.14
HOXC4P09017 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.9■□□□□ 0.14
HOXC4P09017 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
HOXC4P09017 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.9■□□□□ 0.14
HOXC4P09017 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
HOXC4P09017 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 AL136982.4-201ENST00000437689 1740 ntBASIC15.9■□□□□ 0.14
HOXC4P09017 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
HOXC4P09017 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.9■□□□□ 0.14
HOXC4P09017 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.9■□□□□ 0.14
HOXC4P09017 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
HOXC4P09017 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HOXC4P09017 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.9■□□□□ 0.14
HOXC4P09017 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms