Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
COL2A1P02458 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL2A1P02458 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL2A1P02458 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.9■□□□□ 0.62
COL2A1P02458 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
COL2A1P02458 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
COL2A1P02458 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.9■□□□□ 0.62
COL2A1P02458 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC18.9■□□□□ 0.62
COL2A1P02458 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.9■□□□□ 0.62
COL2A1P02458 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.9■□□□□ 0.62
COL2A1P02458 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.9■□□□□ 0.62
COL2A1P02458 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.9■□□□□ 0.62
COL2A1P02458 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL2A1P02458 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL2A1P02458 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
COL2A1P02458 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL2A1P02458 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL2A1P02458 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL2A1P02458 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
COL2A1P02458 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL2A1P02458 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL2A1P02458 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL2A1P02458 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL2A1P02458 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL2A1P02458 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL2A1P02458 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL2A1P02458 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL2A1P02458 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
COL2A1P02458 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.89■□□□□ 0.61
COL2A1P02458 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.89■□□□□ 0.61
COL2A1P02458 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
COL2A1P02458 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL2A1P02458 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC18.89■□□□□ 0.61
COL2A1P02458 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC18.89■□□□□ 0.61
COL2A1P02458 AC015936.2-201ENST00000593177 259 ntBASIC18.89■□□□□ 0.61
COL2A1P02458 BRI3BPP1-201ENST00000594224 787 ntBASIC18.89■□□□□ 0.61
COL2A1P02458 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
COL2A1P02458 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.89■□□□□ 0.61
COL2A1P02458 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
COL2A1P02458 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.89■□□□□ 0.61
COL2A1P02458 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
COL2A1P02458 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL2A1P02458 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL2A1P02458 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL2A1P02458 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL2A1P02458 UBALD1-205ENST00000590891 2641 ntBASIC18.88■□□□□ 0.61
COL2A1P02458 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL2A1P02458 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.88■□□□□ 0.61
COL2A1P02458 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL2A1P02458 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
COL2A1P02458 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.88■□□□□ 0.61
COL2A1P02458 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL2A1P02458 AC112492.5-201ENST00000421897 457 ntBASIC18.88■□□□□ 0.61
COL2A1P02458 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.88■□□□□ 0.61
COL2A1P02458 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL2A1P02458 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.88■□□□□ 0.61
COL2A1P02458 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL2A1P02458 USP32P1-208ENST00000506594 1164 ntBASIC18.88■□□□□ 0.61
COL2A1P02458 SLED1-202ENST00000512051 380 ntBASIC18.88■□□□□ 0.61
COL2A1P02458 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.88■□□□□ 0.61
COL2A1P02458 AC008735.3-201ENST00000596646 500 ntBASIC18.88■□□□□ 0.61
COL2A1P02458 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.88■□□□□ 0.61
COL2A1P02458 AC017083.2-201ENST00000608069 979 ntBASIC18.88■□□□□ 0.61
COL2A1P02458 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.88■□□□□ 0.61
COL2A1P02458 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL2A1P02458 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
COL2A1P02458 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
COL2A1P02458 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
COL2A1P02458 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.87■□□□□ 0.61
COL2A1P02458 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC18.87■□□□□ 0.61
COL2A1P02458 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
COL2A1P02458 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.87■□□□□ 0.61
COL2A1P02458 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL2A1P02458 MIR1909-201ENST00000411312 80 ntBASIC18.87■□□□□ 0.61
COL2A1P02458 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.87■□□□□ 0.61
COL2A1P02458 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC18.87■□□□□ 0.61
COL2A1P02458 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms