Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.66■□□□□ 0.26
HOXC11O43248 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HOXC11O43248 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.66■□□□□ 0.26
HOXC11O43248 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 CICP6-201ENST00000457191 2729 ntBASIC16.66■□□□□ 0.26
HOXC11O43248 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXC11O43248 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.66■□□□□ 0.26
HOXC11O43248 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.66■□□□□ 0.26
HOXC11O43248 GAPDHP21-201ENST00000450301 1010 ntBASIC16.66■□□□□ 0.26
HOXC11O43248 AP005018.1-201ENST00000525475 301 ntBASIC16.66■□□□□ 0.26
HOXC11O43248 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.66■□□□□ 0.26
HOXC11O43248 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.66■□□□□ 0.26
HOXC11O43248 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.66■□□□□ 0.26
HOXC11O43248 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.66■□□□□ 0.26
HOXC11O43248 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.66■□□□□ 0.26
HOXC11O43248 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.66■□□□□ 0.26
HOXC11O43248 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.66■□□□□ 0.26
HOXC11O43248 AC025048.6-201ENST00000634326 1161 ntBASIC16.66■□□□□ 0.26
HOXC11O43248 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
HOXC11O43248 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HOXC11O43248 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.65■□□□□ 0.26
HOXC11O43248 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HOXC11O43248 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HOXC11O43248 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
HOXC11O43248 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXC11O43248 AC005622.1-201ENST00000636801 1703 ntBASIC16.65■□□□□ 0.26
HOXC11O43248 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
HOXC11O43248 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXC11O43248 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.65■□□□□ 0.26
HOXC11O43248 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HOXC11O43248 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
HOXC11O43248 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
HOXC11O43248 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXC11O43248 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.65■□□□□ 0.26
HOXC11O43248 AL139010.1-201ENST00000454878 894 ntBASIC16.65■□□□□ 0.26
HOXC11O43248 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.65■□□□□ 0.26
HOXC11O43248 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.65■□□□□ 0.26
HOXC11O43248 AL365330.1-201ENST00000607459 531 ntBASIC16.65■□□□□ 0.26
HOXC11O43248 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HOXC11O43248 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 AL162727.3-201ENST00000635661 2787 ntBASIC16.65■□□□□ 0.26
HOXC11O43248 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.65■□□□□ 0.26
HOXC11O43248 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HOXC11O43248 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HOXC11O43248 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
HOXC11O43248 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.64■□□□□ 0.25
HOXC11O43248 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 AC090340.1-201ENST00000620778 4980 ntBASIC16.64■□□□□ 0.25
HOXC11O43248 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.64■□□□□ 0.25
HOXC11O43248 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.64■□□□□ 0.25
HOXC11O43248 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.64■□□□□ 0.25
HOXC11O43248 AC135586.1-201ENST00000539323 574 ntBASIC16.64■□□□□ 0.25
HOXC11O43248 AL033527.5-202ENST00000641632 1098 ntBASIC16.64■□□□□ 0.25
HOXC11O43248 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.64■□□□□ 0.25
HOXC11O43248 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HOXC11O43248 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms