Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.14■■■□□ 2.58
NCBP3Q53F19 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
NCBP3Q53F19 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC31.14■■■□□ 2.58
NCBP3Q53F19 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
NCBP3Q53F19 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC31.13■■■□□ 2.57
NCBP3Q53F19 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC31.13■■■□□ 2.57
NCBP3Q53F19 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC31.12■■■□□ 2.57
NCBP3Q53F19 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC31.12■■■□□ 2.57
NCBP3Q53F19 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC31.12■■■□□ 2.57
NCBP3Q53F19 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
NCBP3Q53F19 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC31.12■■■□□ 2.57
NCBP3Q53F19 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
NCBP3Q53F19 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
NCBP3Q53F19 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC31.11■■■□□ 2.57
NCBP3Q53F19 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
NCBP3Q53F19 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
NCBP3Q53F19 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC31.11■■■□□ 2.57
NCBP3Q53F19 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC31.11■■■□□ 2.57
NCBP3Q53F19 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
NCBP3Q53F19 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
NCBP3Q53F19 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC31.1■■■□□ 2.57
NCBP3Q53F19 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC31.1■■■□□ 2.57
NCBP3Q53F19 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC31.1■■■□□ 2.57
NCBP3Q53F19 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC31.1■■■□□ 2.57
NCBP3Q53F19 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
NCBP3Q53F19 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC31.09■■■□□ 2.57
NCBP3Q53F19 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
NCBP3Q53F19 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
NCBP3Q53F19 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC31.09■■■□□ 2.57
NCBP3Q53F19 TSPY13P-201ENST00000338964 914 ntBASIC31.09■■■□□ 2.57
NCBP3Q53F19 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC31.09■■■□□ 2.57
NCBP3Q53F19 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC31.09■■■□□ 2.57
NCBP3Q53F19 AC074183.2-201ENST00000623112 922 ntBASIC31.09■■■□□ 2.57
NCBP3Q53F19 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
NCBP3Q53F19 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
NCBP3Q53F19 MTX2-204ENST00000443241 799 ntTSL 3 BASIC31.08■■■□□ 2.57
NCBP3Q53F19 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
NCBP3Q53F19 MIR6089-201ENST00000616698 64 ntBASIC31.08■■■□□ 2.57
NCBP3Q53F19 AC012354.3-201ENST00000623734 483 ntBASIC31.08■■■□□ 2.57
NCBP3Q53F19 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC31.08■■■□□ 2.57
NCBP3Q53F19 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
NCBP3Q53F19 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
NCBP3Q53F19 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
NCBP3Q53F19 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
NCBP3Q53F19 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
NCBP3Q53F19 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC31.07■■■□□ 2.56
NCBP3Q53F19 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
NCBP3Q53F19 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
NCBP3Q53F19 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC31.07■■■□□ 2.56
NCBP3Q53F19 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NCBP3Q53F19 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
NCBP3Q53F19 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
NCBP3Q53F19 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NCBP3Q53F19 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
NCBP3Q53F19 AC142381.3-201ENST00000568208 1670 ntBASIC31.06■■■□□ 2.56
NCBP3Q53F19 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC31.06■■■□□ 2.56
NCBP3Q53F19 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC31.05■■■□□ 2.56
NCBP3Q53F19 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
NCBP3Q53F19 FOXO3B-201ENST00000395675 1928 ntBASIC31.05■■■□□ 2.56
NCBP3Q53F19 HYI-210ENST00000486909 905 ntTSL 5 BASIC31.05■■■□□ 2.56
NCBP3Q53F19 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC31.05■■■□□ 2.56
NCBP3Q53F19 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
NCBP3Q53F19 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
NCBP3Q53F19 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
NCBP3Q53F19 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
NCBP3Q53F19 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
NCBP3Q53F19 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC31.03■■■□□ 2.56
NCBP3Q53F19 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
NCBP3Q53F19 IDNK-201ENST00000376417 511 ntTSL 5 BASIC31.03■■■□□ 2.56
NCBP3Q53F19 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
NCBP3Q53F19 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.03■■■□□ 2.56
NCBP3Q53F19 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
NCBP3Q53F19 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
NCBP3Q53F19 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
NCBP3Q53F19 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC31.02■■■□□ 2.56
NCBP3Q53F19 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.02■■■□□ 2.56
NCBP3Q53F19 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC31.02■■■□□ 2.56
NCBP3Q53F19 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC31.02■■■□□ 2.56
NCBP3Q53F19 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC31.02■■■□□ 2.56
NCBP3Q53F19 AC022211.4-201ENST00000625094 2161 ntBASIC31.02■■■□□ 2.56
NCBP3Q53F19 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
NCBP3Q53F19 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC31.01■■■□□ 2.56
NCBP3Q53F19 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
NCBP3Q53F19 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
NCBP3Q53F19 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
NCBP3Q53F19 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
NCBP3Q53F19 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
NCBP3Q53F19 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
NCBP3Q53F19 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
NCBP3Q53F19 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC31■■■□□ 2.55
NCBP3Q53F19 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
NCBP3Q53F19 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC30.99■■■□□ 2.55
NCBP3Q53F19 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC30.99■■■□□ 2.55
NCBP3Q53F19 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
NCBP3Q53F19 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC30.99■■■□□ 2.55
NCBP3Q53F19 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC30.99■■■□□ 2.55
NCBP3Q53F19 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC30.99■■■□□ 2.55
NCBP3Q53F19 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
NCBP3Q53F19 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
NCBP3Q53F19 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms