Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC17.72■□□□□ 0.43
FOXA3P55318 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA3P55318 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA3P55318 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC17.71■□□□□ 0.43
FOXA3P55318 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
FOXA3P55318 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC17.71■□□□□ 0.43
FOXA3P55318 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
FOXA3P55318 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
FOXA3P55318 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA3P55318 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA3P55318 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA3P55318 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA3P55318 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA3P55318 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA3P55318 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA3P55318 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
FOXA3P55318 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA3P55318 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA3P55318 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA3P55318 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA3P55318 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
FOXA3P55318 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
FOXA3P55318 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA3P55318 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA3P55318 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
FOXA3P55318 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
FOXA3P55318 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA3P55318 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FOXA3P55318 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA3P55318 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA3P55318 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA3P55318 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA3P55318 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
FOXA3P55318 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA3P55318 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC17.68■□□□□ 0.42
FOXA3P55318 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA3P55318 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
FOXA3P55318 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
FOXA3P55318 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FOXA3P55318 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA3P55318 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA3P55318 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA3P55318 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA3P55318 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA3P55318 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FOXA3P55318 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
FOXA3P55318 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA3P55318 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA3P55318 RPS2-210ENST00000530225 765 ntTSL 2 BASIC17.66■□□□□ 0.42
FOXA3P55318 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC17.66■□□□□ 0.42
FOXA3P55318 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FOXA3P55318 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
FOXA3P55318 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA3P55318 SLC6A10P-202ENST00000431994 2058 ntBASIC17.65■□□□□ 0.42
FOXA3P55318 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA3P55318 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA3P55318 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA3P55318 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC17.65■□□□□ 0.42
FOXA3P55318 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA3P55318 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA3P55318 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA3P55318 PKD1P6-201ENST00000343738 4769 ntBASIC17.65■□□□□ 0.42
FOXA3P55318 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA3P55318 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
FOXA3P55318 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC17.64■□□□□ 0.42
FOXA3P55318 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
FOXA3P55318 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
FOXA3P55318 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
FOXA3P55318 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXA3P55318 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA3P55318 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA3P55318 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA3P55318 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
FOXA3P55318 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA3P55318 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA3P55318 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXA3P55318 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA3P55318 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
FOXA3P55318 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
FOXA3P55318 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC17.63■□□□□ 0.41
FOXA3P55318 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA3P55318 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA3P55318 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA3P55318 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA3P55318 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC17.62■□□□□ 0.41
FOXA3P55318 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA3P55318 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA3P55318 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA3P55318 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA3P55318 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA3P55318 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA3P55318 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC17.61■□□□□ 0.41
FOXA3P55318 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA3P55318 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.61■□□□□ 0.41
FOXA3P55318 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA3P55318 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA3P55318 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA3P55318 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA3P55318 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA3P55318 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms