Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC39.57■■■■□ 3.93
CHD1O14646 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC39.57■■■■□ 3.93
CHD1O14646 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC39.57■■■■□ 3.93
CHD1O14646 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC39.57■■■■□ 3.93
CHD1O14646 CLTA-210ENST00000540080 989 ntTSL 2 BASIC39.57■■■■□ 3.93
CHD1O14646 AF213884.3-201ENST00000563833 479 ntBASIC39.57■■■■□ 3.93
CHD1O14646 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC39.57■■■■□ 3.92
CHD1O14646 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC39.57■■■■□ 3.92
CHD1O14646 AP001330.3-201ENST00000520123 633 ntBASIC39.56■■■■□ 3.92
CHD1O14646 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC39.56■■■■□ 3.92
CHD1O14646 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC39.55■■■■□ 3.92
CHD1O14646 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC39.55■■■■□ 3.92
CHD1O14646 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC39.53■■■■□ 3.92
CHD1O14646 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC39.53■■■■□ 3.92
CHD1O14646 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC39.53■■■■□ 3.92
CHD1O14646 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC39.53■■■■□ 3.92
CHD1O14646 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC39.53■■■■□ 3.92
CHD1O14646 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC39.52■■■■□ 3.92
CHD1O14646 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC39.52■■■■□ 3.92
CHD1O14646 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC39.52■■■■□ 3.92
CHD1O14646 MIR939-201ENST00000401314 82 ntBASIC39.52■■■■□ 3.92
CHD1O14646 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC39.52■■■■□ 3.92
CHD1O14646 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
CHD1O14646 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC39.51■■■■□ 3.92
CHD1O14646 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
CHD1O14646 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
CHD1O14646 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC39.51■■■■□ 3.92
CHD1O14646 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC39.51■■■■□ 3.91
CHD1O14646 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
CHD1O14646 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC39.5■■■■□ 3.91
CHD1O14646 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
CHD1O14646 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC39.49■■■■□ 3.91
CHD1O14646 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC39.49■■■■□ 3.91
CHD1O14646 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
CHD1O14646 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC39.49■■■■□ 3.91
CHD1O14646 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC39.48■■■■□ 3.91
CHD1O14646 HYI-206ENST00000372434 1025 ntTSL 5 BASIC39.48■■■■□ 3.91
CHD1O14646 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC39.48■■■■□ 3.91
CHD1O14646 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC39.47■■■■□ 3.91
CHD1O14646 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC39.47■■■■□ 3.91
CHD1O14646 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC39.47■■■■□ 3.91
CHD1O14646 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC39.47■■■■□ 3.91
CHD1O14646 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC39.47■■■■□ 3.91
CHD1O14646 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC39.46■■■■□ 3.91
CHD1O14646 AL355001.2-201ENST00000620617 1191 ntBASIC39.46■■■■□ 3.91
CHD1O14646 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC39.46■■■■□ 3.91
CHD1O14646 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC39.46■■■■□ 3.91
CHD1O14646 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC39.45■■■■□ 3.91
CHD1O14646 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC39.45■■■■□ 3.91
CHD1O14646 GAK-223ENST00000628912 497 ntTSL 5 BASIC39.45■■■■□ 3.91
CHD1O14646 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC39.45■■■■□ 3.91
CHD1O14646 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC39.45■■■■□ 3.91
CHD1O14646 RARRES2P11-201ENST00000635158 484 ntBASIC39.45■■■■□ 3.91
CHD1O14646 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC39.44■■■■□ 3.9
CHD1O14646 AF131216.4-201ENST00000638924 1588 ntBASIC39.44■■■■□ 3.9
CHD1O14646 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC39.44■■■■□ 3.9
CHD1O14646 AL136967.2-201ENST00000623968 743 ntBASIC39.44■■■■□ 3.9
CHD1O14646 GLI3-203ENST00000437480 451 ntTSL 2 BASIC39.43■■■■□ 3.9
CHD1O14646 GRAMD4P4-201ENST00000613563 1115 ntBASIC39.43■■■■□ 3.9
CHD1O14646 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC39.43■■■■□ 3.9
CHD1O14646 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
CHD1O14646 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC39.42■■■■□ 3.9
CHD1O14646 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC39.42■■■■□ 3.9
CHD1O14646 CLTA-206ENST00000466396 695 ntTSL 2 BASIC39.42■■■■□ 3.9
CHD1O14646 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC39.42■■■■□ 3.9
CHD1O14646 AL139393.2-201ENST00000608721 2025 ntBASIC39.42■■■■□ 3.9
CHD1O14646 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC39.41■■■■□ 3.9
CHD1O14646 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC39.4■■■■□ 3.9
CHD1O14646 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC39.4■■■■□ 3.9
CHD1O14646 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC39.4■■■■□ 3.9
CHD1O14646 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC39.39■■■■□ 3.9
CHD1O14646 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC39.39■■■■□ 3.9
CHD1O14646 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC39.39■■■■□ 3.9
CHD1O14646 SNX5-217ENST00000606557 1087 ntBASIC39.39■■■■□ 3.9
CHD1O14646 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC39.39■■■■□ 3.9
CHD1O14646 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC39.38■■■■□ 3.89
CHD1O14646 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC39.38■■■■□ 3.89
CHD1O14646 STOX2-205ENST00000513034 807 ntTSL 3 BASIC39.37■■■■□ 3.89
CHD1O14646 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC39.36■■■■□ 3.89
CHD1O14646 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC39.35■■■■□ 3.89
CHD1O14646 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC39.35■■■■□ 3.89
CHD1O14646 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC39.34■■■■□ 3.89
CHD1O14646 IKBKGP1-201ENST00000612193 1073 ntBASIC39.34■■■■□ 3.89
CHD1O14646 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC39.34■■■■□ 3.89
CHD1O14646 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC39.34■■■■□ 3.89
CHD1O14646 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC39.34■■■■□ 3.89
CHD1O14646 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC39.33■■■■□ 3.89
CHD1O14646 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC39.33■■■■□ 3.89
CHD1O14646 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC39.33■■■■□ 3.89
CHD1O14646 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC39.33■■■■□ 3.89
CHD1O14646 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.89
CHD1O14646 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC39.32■■■■□ 3.89
CHD1O14646 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.89
CHD1O14646 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC39.32■■■■□ 3.89
CHD1O14646 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC39.32■■■■□ 3.88
CHD1O14646 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC39.31■■■■□ 3.88
CHD1O14646 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC39.31■■■■□ 3.88
CHD1O14646 RBM38-205ENST00000440234 686 ntTSL 2 BASIC39.31■■■■□ 3.88
CHD1O14646 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC39.31■■■■□ 3.88
CHD1O14646 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC39.31■■■■□ 3.88
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms