Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
SHROOM4Q9ULL8 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 WFDC1-204ENST00000613603 549 ntBASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.54
SHROOM4Q9ULL8 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 AC092506.1-202ENST00000401022 528 ntBASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 MYCLP2-201ENST00000449268 967 ntBASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 AC044860.1-202ENST00000559481 777 ntBASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 TMEM261P1-201ENST00000604899 340 ntBASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 TEX48-202ENST00000612244 662 ntTSL 3 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 WNT11-204ENST00000621122 789 ntTSL 5 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC30.94■■■□□ 2.54
SHROOM4Q9ULL8 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 AC105020.1-201ENST00000435356 2205 ntBASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 APOC3-202ENST00000375345 604 ntTSL 5 BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 AC093724.1-201ENST00000448659 1027 ntBASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 USB1-203ENST00000539737 1212 ntTSL 2 BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 AC023310.3-201ENST00000557027 670 ntBASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 AC100756.1-201ENST00000562736 682 ntBASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 AC138749.3-201ENST00000567691 622 ntBASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 FHL2-212ENST00000607522 759 ntTSL 2 BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 AC116165.1-201ENST00000611806 668 ntBASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 AL139099.5-201ENST00000635274 300 ntBASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC30.93■■■□□ 2.54
SHROOM4Q9ULL8 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 AC078925.2-201ENST00000624013 1973 ntBASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 AC098850.1-201ENST00000419919 790 ntBASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 AC099548.2-209ENST00000480264 625 ntBASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 TPRX2P-201ENST00000535362 881 ntBASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 AL583810.1-201ENST00000553344 1045 ntBASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 AC080080.1-201ENST00000625121 2420 ntBASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
SHROOM4Q9ULL8 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 ARL16-210ENST00000574938 751 ntTSL 2 BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
SHROOM4Q9ULL8 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms