Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 SPDYE7P-202ENST00000420373 878 ntBASIC16.51■□□□□ 0.23
LHX3Q9UBR4 AL645939.2-201ENST00000427340 991 ntBASIC16.51■□□□□ 0.23
LHX3Q9UBR4 CNN2P2-201ENST00000443536 909 ntBASIC16.51■□□□□ 0.23
LHX3Q9UBR4 CNN2P3-201ENST00000450201 906 ntBASIC16.51■□□□□ 0.23
LHX3Q9UBR4 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 AC024267.1-201ENST00000582320 895 ntBASIC16.51■□□□□ 0.23
LHX3Q9UBR4 MIR4453-201ENST00000584019 89 ntBASIC16.51■□□□□ 0.23
LHX3Q9UBR4 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 AL136317.3-201ENST00000618497 906 ntBASIC16.51■□□□□ 0.23
LHX3Q9UBR4 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
LHX3Q9UBR4 AL662844.4-201ENST00000606367 2838 ntBASIC16.51■□□□□ 0.23
LHX3Q9UBR4 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 AC099398.1-201ENST00000567919 2776 ntBASIC16.5■□□□□ 0.23
LHX3Q9UBR4 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 RFPL4AP1-201ENST00000530883 850 ntBASIC16.5■□□□□ 0.23
LHX3Q9UBR4 BANF1P1-201ENST00000553684 263 ntBASIC16.5■□□□□ 0.23
LHX3Q9UBR4 AC051619.7-201ENST00000568314 623 ntBASIC16.5■□□□□ 0.23
LHX3Q9UBR4 MIR4321-201ENST00000592276 80 ntBASIC16.5■□□□□ 0.23
LHX3Q9UBR4 AL365330.1-201ENST00000607459 531 ntBASIC16.5■□□□□ 0.23
LHX3Q9UBR4 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 AC106028.4-201ENST00000614509 607 ntBASIC16.5■□□□□ 0.23
LHX3Q9UBR4 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
LHX3Q9UBR4 AL118508.1-201ENST00000613502 2345 ntBASIC16.5■□□□□ 0.23
LHX3Q9UBR4 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.49■□□□□ 0.23
LHX3Q9UBR4 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 AC003101.2-201ENST00000612557 442 ntBASIC16.49■□□□□ 0.23
LHX3Q9UBR4 AC007967.4-201ENST00000614700 386 ntBASIC16.49■□□□□ 0.23
LHX3Q9UBR4 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 AC079328.2-201ENST00000561241 3354 ntBASIC16.49■□□□□ 0.23
LHX3Q9UBR4 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX3Q9UBR4 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.48■□□□□ 0.23
LHX3Q9UBR4 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LHX3Q9UBR4 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LHX3Q9UBR4 TUBB3P1-201ENST00000405796 1332 ntBASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms