Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.62■□□□□ 0.41
SIX2Q9NPC8 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX2Q9NPC8 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX2Q9NPC8 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX2Q9NPC8 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX2Q9NPC8 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.62■□□□□ 0.41
SIX2Q9NPC8 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SIX2Q9NPC8 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 MED15P5-201ENST00000423150 992 ntBASIC17.61■□□□□ 0.41
SIX2Q9NPC8 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 KRT18P3-201ENST00000451602 1288 ntBASIC17.61■□□□□ 0.41
SIX2Q9NPC8 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 AC002347.1-201ENST00000569543 541 ntBASIC17.61■□□□□ 0.41
SIX2Q9NPC8 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 AC027601.4-201ENST00000611259 610 ntBASIC17.61■□□□□ 0.41
SIX2Q9NPC8 FAM197Y3-203ENST00000618346 717 ntBASIC17.61■□□□□ 0.41
SIX2Q9NPC8 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 AL589702.1-201ENST00000641229 1509 ntBASIC17.61■□□□□ 0.41
SIX2Q9NPC8 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX2Q9NPC8 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 AL591424.1-201ENST00000442569 1213 ntBASIC17.6■□□□□ 0.41
SIX2Q9NPC8 RNA5SP416-201ENST00000516838 111 ntBASIC17.6■□□□□ 0.41
SIX2Q9NPC8 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 AL138918.1-201ENST00000568306 659 ntBASIC17.6■□□□□ 0.41
SIX2Q9NPC8 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SIX2Q9NPC8 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 FOXO1B-201ENST00000504678 1527 ntBASIC17.59■□□□□ 0.41
SIX2Q9NPC8 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms